Characterization of virulence factors and phylogenetic group determination of Escherichia coli isolated from diarrheic and non-diarrheic calves from Brazil

Folia Microbiol (Praha). 2017 Mar;62(2):139-144. doi: 10.1007/s12223-016-0480-9. Epub 2016 Oct 27.

Abstract

This study aimed to detect virulence factors, pathovars, and phylogenetic groups of Escherichia coli strains obtained from feces of calves with and without diarrhea up to 70 days old and to determine the association between occurrence of diarrhea, phylogenetic groups, and pathovars. Phylo-typing analysis of the 336 E. coli strains isolated from calves with Clermont method showed that 21 (6.25 %) belong to phylogroup A, 228 (67.85 %) to phylogroup B1, 2 (0.6 %) to phylogroup B2, 5 (1.49 %) to phylogroup C, 57 (16.96 %) to phylogroup E, and 3 (0.9 %) to phylogroup F. Phylogroup D was not identified and 20 strains (5.95 %) were assigned as "unknown." The distribution of phylogenetic groups among pathovars showed that NTEC belong to phylogroups B1 (17) and C (4); EPEC to phylogroups B1 (6) and E (8); STEC to phylogroups A (5), B1 (56), B2 (2), C (1), and E (15); EHEC to phylogroups B1 (95) and E (5); and ETEC to phylogroups A (3), B1 (7), and E (10). The EAST-1 strains were phylogroups A (13), B1 (47), E (19), and F (3); E. coli strains of "unknown" phylogroups belonged to pathovars EPEC (1), EHEC (2), STEC (7), and EAST-1 strains (6). ETEC was associated with diarrhea (P = 0.002). Our study did not find association between the phylogenetic background and occurrence of diarrhea (P = 0.164) but did find some relationship in phylogenetic group and pathovar. The study showed that EHEC and STEC are classified as phylogroup B1, EAST-1 phylogroup A, ETEC, and EPEC phylogroup E.

Keywords: Calves; Escherichia coli; Pathovars; Phylogenetic group.

MeSH terms

  • Animals
  • Bacterial Typing Techniques
  • Brazil
  • Cattle
  • Cattle Diseases / diagnosis*
  • Cattle Diseases / microbiology
  • Cattle Diseases / pathology
  • DNA, Bacterial / genetics
  • Diarrhea / diagnosis
  • Diarrhea / microbiology
  • Diarrhea / pathology
  • Diarrhea / veterinary*
  • Enteropathogenic Escherichia coli / classification
  • Enteropathogenic Escherichia coli / genetics
  • Enteropathogenic Escherichia coli / growth & development
  • Enteropathogenic Escherichia coli / pathogenicity*
  • Enterotoxigenic Escherichia coli / classification
  • Enterotoxigenic Escherichia coli / genetics
  • Enterotoxigenic Escherichia coli / growth & development
  • Enterotoxigenic Escherichia coli / pathogenicity*
  • Escherichia coli Infections / diagnosis
  • Escherichia coli Infections / microbiology
  • Escherichia coli Infections / pathology
  • Escherichia coli Infections / veterinary*
  • Feces / microbiology
  • Gene Expression
  • Genotype
  • Male
  • Phylogeny
  • Polymerase Chain Reaction
  • Shiga-Toxigenic Escherichia coli / classification
  • Shiga-Toxigenic Escherichia coli / genetics
  • Shiga-Toxigenic Escherichia coli / growth & development
  • Shiga-Toxigenic Escherichia coli / pathogenicity*
  • Virulence
  • Virulence Factors / genetics*
  • Virulence Factors / metabolism

Substances

  • DNA, Bacterial
  • Virulence Factors