Next-Generation Sequencing and In Vitro Expression Study of ADAMTS13 Single Nucleotide Variants in Deep Vein Thrombosis

PLoS One. 2016 Nov 1;11(11):e0165665. doi: 10.1371/journal.pone.0165665. eCollection 2016.

Abstract

Background: Deep vein thrombosis (DVT) genetic predisposition is partially known.

Objectives: This study aimed at assessing the functional impact of nine ADAMTS13 single nucleotide variants (SNVs) previously reported to be associated as a group with DVT in a burden test and the individual association of selected variants with DVT risk in two replication studies.

Methods: Wild-type and mutant recombinant ADAMTS13 were transiently expressed in HEK293 cells. Antigen and activity of recombinant ADAMTS13 were measured by ELISA and FRETS-VWF73 assays, respectively. The replication studies were performed in an Italian case-control study (Milan study; 298/298 patients/controls) using a next-generation sequencing approach and in a Dutch case-control study (MEGA study; 4306/4887 patients/controls) by TaqMan assays.

Results: In vitro results showed reduced ADAMTS13 activity for three SNVs (p.Val154Ile [15%; 95% confidence interval [CI] 14-16], p.Asp187His [19%; 95%[CI] 17-21], p.Arg421Cys [24%; 95%[CI] 22-26]) similar to reduced plasma ADAMTS13 levels of patients carriers for these SNVs. Therefore these three SNVs were interrogated for risk association. The first replication study identified 3 heterozygous carriers (2 cases, 1 control) of p.Arg421Cys (odds ratio [OR] 2, 95%[CI] 0.18-22.25). The second replication study identified 2 heterozygous carriers (1 case, 1 control) of p.Asp187His ([OR] 1.14, 95%[CI] 0.07-18.15) and 10 heterozygous carriers (4 cases, 6 controls) of p.Arg421Cys ([OR] 0.76, 95%[CI] 0.21-2.68).

Conclusions: Three SNVs (p.Val154Ile, p.Asp187His and p.Arg421Cys) showed reduced ex vivo and in vitro ADAMTS13 levels. However, the low frequency of these variants makes it difficult to confirm their association with DVT.

MeSH terms

  • ADAMTS13 Protein / analysis
  • ADAMTS13 Protein / genetics*
  • Case-Control Studies
  • Female
  • Genetic Predisposition to Disease
  • Genotype
  • HEK293 Cells
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Male
  • Polymorphism, Single Nucleotide*
  • Venous Thrombosis / genetics*

Substances

  • ADAMTS13 Protein
  • ADAMTS13 protein, human

Grants and funding

The study was supported by the Italian Ministry of Health – Grant No. RF-2009-1530493 (Recipient IM), the Italian Ministry of Health – Grant No. GR-2011-02351977 (Recipient MTP) and the Italo Monzino Foundation (Recipient FP).