An exploratory clustering approach for extracting stride parameters from tracking collars on free-ranging wild animals

J Exp Biol. 2017 Feb 1;220(Pt 3):341-346. doi: 10.1242/jeb.146035. Epub 2016 Nov 3.

Abstract

Changes in stride frequency and length with speed are key parameters in animal locomotion research. They are commonly measured in a laboratory on a treadmill or by filming trained captive animals. Here, we show that a clustering approach can be used to extract these variables from data collected by a tracking collar containing a GPS module and tri-axis accelerometers and gyroscopes. The method enables stride parameters to be measured during free-ranging locomotion in natural habitats. As it does not require labelled data, it is particularly suitable for use with difficult to observe animals. The method was tested on large data sets collected from collars on free-ranging lions and African wild dogs and validated using a domestic dog.

Keywords: Animal locomotion; Stride segmentation; Unsupervised machine learning.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Accelerometry
  • Animals
  • Animals, Wild / physiology*
  • Cluster Analysis
  • Dogs / physiology*
  • Ecosystem
  • Female
  • Gait
  • Geographic Information Systems
  • Lions / physiology*
  • Locomotion*
  • Machine Learning
  • Male