Site-Directed Mutagenesis and Its Application in Studying the Interactions of T3S Components

Methods Mol Biol. 2017:1531:11-31. doi: 10.1007/978-1-4939-6649-3_2.

Abstract

Type III secretion systems are a prolific virulence determinant among Gram-negative bacteria. They are used to paralyze the host cell, which enables bacterial pathogens to establish often fatal infections-unless an effective therapeutic intervention is available. However, as a result of a catastrophic rise in infectious bacteria resistant to conventional antibiotics, these bacteria are again a leading cause of worldwide mortality. Hence, this report describes a pDM4-based site-directed mutagenesis strategy that is assisting in our foremost objective to better understand the fundamental workings of the T3SS, using Yersinia as a model pathogenic bacterium. Examples are given that clearly document how pDM4-mediated site-directed mutagenesis has been used to establish clean point mutations and in-frame deletion mutations that have been instrumental in identifying and understanding the molecular interactions between components of the Yersinia type III secretion system.

Keywords: Genetic-based screens; Mutant libraries; Protein-protein interaction assays; Site-directed mutagenesis; Suicide vector pDM4; Type III secretion systems.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Conjugation, Genetic
  • Genome, Bacterial
  • Gram-Negative Bacteria / genetics*
  • Gram-Negative Bacteria / metabolism*
  • Gram-Negative Bacterial Infections / microbiology
  • Mutagenesis, Site-Directed*
  • Mutation
  • Phenotype
  • Plasmids / genetics
  • Polymerase Chain Reaction
  • Protein Binding
  • Protein Interaction Mapping
  • Type III Secretion Systems / genetics*
  • Type III Secretion Systems / metabolism*
  • Virulence Factors / genetics
  • Virulence Factors / metabolism
  • Yersinia / genetics
  • Yersinia / metabolism

Substances

  • Bacterial Proteins
  • Type III Secretion Systems
  • Virulence Factors