Identification of SUMO modification sites in the base excision repair protein, Ntg1

DNA Repair (Amst). 2016 Dec:48:51-62. doi: 10.1016/j.dnarep.2016.10.011. Epub 2016 Oct 31.

Abstract

DNA damaging agents are a constant threat to genomes in both the nucleus and the mitochondria. To combat this threat, a suite of DNA repair pathways cooperate to repair numerous types of DNA damage. If left unrepaired, these damages can result in the accumulation of mutations which can lead to deleterious consequences including cancer and neurodegenerative disorders. The base excision repair (BER) pathway is highly conserved from bacteria to humans and is primarily responsible for the removal and subsequent repair of toxic and mutagenic oxidative DNA lesions. Although the biochemical steps that occur in the BER pathway have been well defined, little is known about how the BER machinery is regulated. The budding yeast, Saccharomyces cerevisiae is a powerful model system to biochemically and genetically dissect BER. BER is initiated by DNA N-glycosylases, such as S. cerevisiae Ntg1. Previous work demonstrates that Ntg1 is post-translationally modified by SUMO in response to oxidative DNA damage suggesting that this modification could modulate the function of Ntg1. In this study, we mapped the specific sites of SUMO modification within Ntg1 and identified the enzymes responsible for sumoylating/desumoylating Ntg1. Using a non-sumoylatable version of Ntg1, ntg1ΔSUMO, we performed an initial assessment of the functional impact of Ntg1 SUMO modification in the cellular response to DNA damage. Finally, we demonstrate that, similar to Ntg1, the human homologue of Ntg1, NTHL1, can also be SUMO-modified in response to oxidative stress. Our results suggest that SUMO modification of BER proteins could be a conserved mechanism to coordinate cellular responses to DNA damage.

Keywords: Base excision repair (BER); NTHL1; Ntg1; SUMO; Sumoylation.

MeSH terms

  • DNA Damage
  • DNA Repair*
  • DNA, Fungal / genetics
  • DNA, Fungal / metabolism
  • DNA-(Apurinic or Apyrimidinic Site) Lyase / genetics*
  • DNA-(Apurinic or Apyrimidinic Site) Lyase / metabolism
  • Deoxyribonuclease (Pyrimidine Dimer) / genetics
  • Deoxyribonuclease (Pyrimidine Dimer) / metabolism
  • Humans
  • Hydrogen Peroxide / pharmacology
  • Mesylates / pharmacology
  • Models, Molecular
  • Peptide Mapping
  • Protein Domains
  • Protein Processing, Post-Translational*
  • Protein Structure, Secondary
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • SUMO-1 Protein / genetics*
  • SUMO-1 Protein / metabolism
  • Saccharomyces cerevisiae / drug effects
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / genetics*
  • Saccharomyces cerevisiae Proteins / metabolism
  • Sumoylation

Substances

  • DNA, Fungal
  • Mesylates
  • Recombinant Fusion Proteins
  • SUMO-1 Protein
  • Saccharomyces cerevisiae Proteins
  • methanesulfonic acid
  • Hydrogen Peroxide
  • Deoxyribonuclease (Pyrimidine Dimer)
  • NTHL1 protein, human
  • DNA-(Apurinic or Apyrimidinic Site) Lyase
  • NTG1 protein, S cerevisiae