Single-Cell and Single-Molecule Analysis of Gene Expression Regulation

Annu Rev Genet. 2016 Nov 23:50:267-291. doi: 10.1146/annurev-genet-120215-034854.

Abstract

Recent advancements in single-cell and single-molecule imaging technologies have resolved biological processes in time and space that are fundamental to understanding the regulation of gene expression. Observations of single-molecule events in their cellular context have revealed highly dynamic aspects of transcriptional and post-transcriptional control in eukaryotic cells. This approach can relate transcription with mRNA abundance and lifetimes. Another key aspect of single-cell analysis is the cell-to-cell variability among populations of cells. Definition of heterogeneity has revealed stochastic processes, determined characteristics of under-represented cell types or transitional states, and integrated cellular behaviors in the context of multicellular organisms. In this review, we discuss novel aspects of gene expression of eukaryotic cells and multicellular organisms revealed by the latest advances in single-cell and single-molecule imaging technology.

Keywords: gene expression; mRNA localization; single cell; single-molecule imaging; transcription; translation.

Publication types

  • Review

MeSH terms

  • Animals
  • Chromatin / chemistry
  • Chromatin / genetics
  • Cytoplasm / genetics
  • Gene Expression Profiling / methods
  • Gene Expression Regulation*
  • Humans
  • Promoter Regions, Genetic
  • Protein Biosynthesis
  • RNA, Messenger / analysis
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Single-Cell Analysis / methods*
  • Stem Cells / physiology
  • Transcription Factors / genetics
  • Transcription Factors / metabolism
  • Transcription, Genetic

Substances

  • Chromatin
  • RNA, Messenger
  • Transcription Factors