Histone chaperone activity of Arabidopsis thaliana NRP1 is blocked by cytochrome c

Nucleic Acids Res. 2017 Feb 28;45(4):2150-2165. doi: 10.1093/nar/gkw1215.

Abstract

Higher-order plants and mammals use similar mechanisms to repair and tolerate oxidative DNA damage. Most studies on the DNA repair process have focused on yeast and mammals, in which histone chaperone-mediated nucleosome disassembly/reassembly is essential for DNA to be accessible to repair machinery. However, little is known about the specific role and modulation of histone chaperones in the context of DNA damage in plants. Here, the histone chaperone NRP1, which is closely related to human SET/TAF-Iβ, was found to exhibit nucleosome assembly activity in vitro and to accumulate in the chromatin of Arabidopsis thaliana after DNA breaks. In addition, this work establishes that NRP1 binds to cytochrome c, thereby preventing the former from binding to histones. Since NRP1 interacts with cytochrome c at its earmuff domain, that is, its histone-binding domain, cytochrome c thus competes with core histones and hampers the activity of NRP1 as a histone chaperone. Altogether, the results obtained indicate that the underlying molecular mechanisms in nucleosome disassembly/reassembly are highly conserved throughout evolution, as inferred from the similar inhibition of plant NRP1 and human SET/TAF-Iβ by cytochrome c during DNA damage response.

MeSH terms

  • Arabidopsis
  • Arabidopsis Proteins / chemistry
  • Arabidopsis Proteins / metabolism*
  • Cells, Cultured
  • Chromatin / genetics
  • Chromatin / metabolism
  • Cytochromes c / chemistry
  • Cytochromes c / metabolism*
  • DNA Damage
  • DNA-Binding Proteins
  • Histone Chaperones / chemistry
  • Histone Chaperones / metabolism*
  • Histones / metabolism
  • Humans
  • Models, Molecular
  • Nucleosomes / metabolism
  • Plant Cells
  • Protein Binding
  • Protein Conformation
  • Protein Interaction Domains and Motifs
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • Thermodynamics
  • Transcription Factors / metabolism

Substances

  • Arabidopsis Proteins
  • Chromatin
  • DNA-Binding Proteins
  • Histone Chaperones
  • Histones
  • Nucleosomes
  • SET protein, human
  • Transcription Factors
  • nodulin-related protein 1, Arabidopsis
  • Cytochromes c