Surface Plasmon Resonance: A Useful Strategy for the Identification of Small Molecule Argonaute 2 Protein Binders

Methods Mol Biol. 2017:1517:223-237. doi: 10.1007/978-1-4939-6563-2_16.

Abstract

Surface plasmon resonance (SPR) is one of the most important techniques for the detection and the characterization of molecular interactions. SPR technology is a label-free approach for monitoring biomolecular interactions in real time. The binding of analytes to molecules immobilized on a thin metal film (ligand) determines a change in the refractive index and, therefore in the angle of extinction of light, is reflected when polarized light hits the film, monitored in real time as a change in the position of the dip in reflected intensity. Since SPR detects mass, the technique is label-free.Here, we describe the use of SPR techniques to study the interaction between Argonaute 2 and small molecular compounds selected by means of high-throughput docking screening.

Keywords: Analyte; Ligand; Protein-inhibitor interaction; Small molecules; Surface plasmon resonance.

MeSH terms

  • Argonaute Proteins / chemistry
  • Argonaute Proteins / metabolism*
  • High-Throughput Screening Assays / methods*
  • Humans
  • Ligands
  • MicroRNAs / antagonists & inhibitors
  • MicroRNAs / genetics
  • Molecular Docking Simulation / methods
  • Protein Binding
  • Small Molecule Libraries / chemistry*
  • Small Molecule Libraries / therapeutic use
  • Surface Plasmon Resonance / methods*

Substances

  • AGO2 protein, human
  • Argonaute Proteins
  • Ligands
  • MicroRNAs
  • Small Molecule Libraries