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. 2017 Apr 15;33(8):1253-1254.
doi: 10.1093/bioinformatics/btw812.

SED-ML Web Tools: Generate, Modify and Export Standard-Compliant Simulation Studies

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Free PMC article

SED-ML Web Tools: Generate, Modify and Export Standard-Compliant Simulation Studies

Frank T Bergmann et al. Bioinformatics. .
Free PMC article

Abstract

Summary: The Simulation Experiment Description Markup Language (SED-ML) is a standardized format for exchanging simulation studies independently of software tools. We present the SED-ML Web Tools, an online application for creating, editing, simulating and validating SED-ML documents. The Web Tools implement all current SED-ML specifications and, thus, support complex modifications and co-simulation of models in SBML and CellML formats. Ultimately, the Web Tools lower the bar on working with SED-ML documents and help users create valid simulation descriptions.

Availability and implementation: http://sysbioapps.dyndns.org/SED-ML_Web_Tools/ .

Contact: fbergman@caltech.edu .

Figures

Fig. 1.
Fig. 1.
SED-ML Web Tools importing and then simulating a fully featured COMBINE Archive (Scharm and Touré, 2016). To reproduce, click http://sysbioapps.dyndns.org/SED-ML_Web_Tools/Home/SimulateUrl?url=http://ndownloader.figshare.com/files/5370005.

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