"In-House" Production of Single Stranded Oligodeoxyribonucleotides

Nucleic Acid Ther. 2017 Apr;27(2):115-120. doi: 10.1089/nat.2016.0625. Epub 2017 Jan 4.

Abstract

The most widely used technique for the production of DNA aptamers/oligonucleotides is chemical synthesis. Despite its effectiveness, this technique cannot be performed "in house", making the user fully dependent on a supplier. In this work, we present a simplified method by which it is possible to enzymatically produce DNA aptamers "in house". This new method uses the rolling circle replication followed by a unique cleavage step using the SchI endonuclease. Potentially, any oligonucleotide can be produced by the enzymatic method proposed in this study. To illustrate, we present the production of three variations of the 31-TBA aptamer, a single stranded DNA which has anticoagulant action.

Keywords: G-quadruplex; anticoagulant aptamer; enzymatic synthesis; oligonucleotide production; rolling circle amplification.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anticoagulants / chemical synthesis
  • Anticoagulants / metabolism
  • Aptamers, Nucleotide / biosynthesis*
  • Aptamers, Nucleotide / genetics
  • Base Sequence
  • DNA Restriction Enzymes / metabolism
  • DNA, Single-Stranded / biosynthesis*
  • DNA, Single-Stranded / genetics
  • G-Quadruplexes
  • Humans
  • Nucleic Acid Amplification Techniques*
  • Oligodeoxyribonucleotides / biosynthesis*
  • Oligodeoxyribonucleotides / genetics

Substances

  • Anticoagulants
  • Aptamers, Nucleotide
  • DNA, Single-Stranded
  • Oligodeoxyribonucleotides
  • DNA Restriction Enzymes