A net gas flow can be induced in the gap between periodically structured surfaces held at fixed but different temperatures when the reflection symmetry along the channel axis is broken. Such a situation arises when one surface features a ratchet structure and can be augmented by altering the boundary conditions on different parts of this surface, with some regions reflecting specularly and others diffusely. In order to investigate the physical mechanisms inducing the flow in this configuration at various Knudsen numbers and geometric configurations, direct simulation Monte Carlo (DSMC) simulations are employed using transient adaptive subcells for collision partner selection. At large Knudsen numbers the results compare favorably with analytical expressions, while for small Knudsen numbers a qualitative explanation for the flow in the strong temperature inhomogeneity at the tips of the ratchet is provided. A detailed investigation of the performance for various ratchet geometries suggests optimum working conditions for a Knudsen pump based on this mechanism.