Four distinct types of E.C. 1.2.1.30 enzymes can catalyze the reduction of carboxylic acids to aldehydes

J Biotechnol. 2017 Sep 10;257:222-232. doi: 10.1016/j.jbiotec.2017.02.014. Epub 2017 Feb 20.

Abstract

Increasing demand for chemicals from renewable resources calls for the development of new biotechnological methods for the reduction of oxidized bio-based compounds. Enzymatic carboxylate reduction is highly selective, both in terms of chemo- and product selectivity, but not many carboxylate reductase enzymes (CARs) have been identified on the sequence level to date. Thus far, their phylogeny is unexplored and very little is known about their structure-function-relationship. CARs minimally contain an adenylation domain, a phosphopantetheinylation domain and a reductase domain. We have recently identified new enzymes of fungal origin, using similarity searches against genomic sequences from organisms in which aldehydes were detected upon incubation with carboxylic acids. Analysis of sequences with known CAR functionality and CAR enzymes recently identified in our laboratory suggests that the three-domain architecture mentioned above is modular. The construction of a distance tree with a subsequent 1000-replicate bootstrap analysis showed that the CAR sequences included in our study fall into four distinct subgroups (one of bacterial origin and three of fungal origin, respectively), each with a bootstrap value of 100%. The multiple sequence alignment of all experimentally confirmed CAR protein sequences revealed fingerprint sequences of residues which are likely to be involved in substrate and co-substrate binding and one of the three catalytic substeps, respectively. The fingerprint sequences broaden our understanding of the amino acids that might be essential for the reduction of organic acids to the corresponding aldehydes in CAR proteins.

Keywords: Aryl-aldehyde dehydrogenase (NADP(+)); Biocatalysis; Bootstrap analysis; Carboxylate reductase; Flavor and fragrance; Signature sequence.

MeSH terms

  • Aldehyde Oxidoreductases / classification
  • Aldehyde Oxidoreductases / genetics
  • Aldehyde Oxidoreductases / metabolism*
  • Aldehydes / metabolism*
  • Amino Acid Sequence
  • Bacteria / enzymology
  • Bacteria / genetics
  • Biocatalysis*
  • Biotechnology / methods*
  • Carboxylic Acids / metabolism*
  • Catalytic Domain
  • Escherichia coli / genetics
  • Fungi / enzymology
  • Fungi / genetics
  • Genes, Fungal / genetics
  • Mutagenesis, Site-Directed
  • Oxidation-Reduction
  • Oxidoreductases / metabolism
  • Peptide Mapping
  • Phylogeny
  • Sequence Alignment

Substances

  • Aldehydes
  • Carboxylic Acids
  • Oxidoreductases
  • Aldehyde Oxidoreductases