IDN2 Interacts with RPA and Facilitates DNA Double-Strand Break Repair by Homologous Recombination in Arabidopsis

Plant Cell. 2017 Mar;29(3):589-599. doi: 10.1105/tpc.16.00769. Epub 2017 Feb 21.

Abstract

Repair of DNA double-strand breaks (DSBs) is critical for the maintenance of genome integrity. We previously showed that DSB-induced small RNAs (diRNAs) facilitate homologous recombination-mediated DSB repair in Arabidopsis thaliana Here, we show that INVOLVED IN DE NOVO2 (IDN2), a double-stranded RNA binding protein involved in small RNA-directed DNA methylation, is required for DSB repair in Arabidopsis. We find that IDN2 interacts with the heterotrimeric replication protein A (RPA) complex. Depletion of IDN2 or the diRNA binding ARGONAUTE2 leads to increased accumulation of RPA at DSB sites and mislocalization of the recombination factor RAD51. These findings support a model in which IDN2 interacts with RPA and facilitates the release of RPA from single-stranded DNA tails and subsequent recruitment of RAD51 at DSB sites to promote DSB repair.

MeSH terms

  • Arabidopsis / genetics
  • Arabidopsis / metabolism*
  • Arabidopsis Proteins / genetics
  • Arabidopsis Proteins / metabolism*
  • DNA Breaks, Double-Stranded
  • DNA Repair / genetics
  • DNA Repair / physiology
  • Homologous Recombination / genetics
  • Homologous Recombination / physiology
  • Protein Binding / genetics
  • Protein Binding / physiology
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism*
  • Rad51 Recombinase / genetics
  • Rad51 Recombinase / metabolism
  • Replication Protein A / genetics
  • Replication Protein A / metabolism*

Substances

  • Arabidopsis Proteins
  • IDN2 protein, Arabidopsis
  • RNA-Binding Proteins
  • Replication Protein A
  • ATRAD51 protein, Arabidopsis
  • Rad51 Recombinase