Functional and Structural Characterization of a (+)-Limonene Synthase from Citrus sinensis

Biochemistry. 2017 Mar 28;56(12):1706-1715. doi: 10.1021/acs.biochem.7b00143. Epub 2017 Mar 15.

Abstract

Terpenes make up the largest and most diverse class of natural compounds and have important commercial and medical applications. Limonene is a cyclic monoterpene (C10) present in nature as two enantiomers, (+) and (-), which are produced by different enzymes. The mechanism of production of the (-)-enantiomer has been studied in great detail, but to understand how enantiomeric selectivity is achieved in this class of enzymes, it is important to develop a thorough biochemical description of enzymes that generate (+)-limonene, as well. Here we report the first cloning and biochemical characterization of a (+)-limonene synthase from navel orange (Citrus sinensis). The enzyme obeys classical Michaelis-Menten kinetics and produces exclusively the (+)-enantiomer. We have determined the crystal structure of the apoprotein in an "open" conformation at 2.3 Å resolution. Comparison with the structure of (-)-limonene synthase (Mentha spicata), which is representative of a fully closed conformation (Protein Data Bank entry 2ONG ), reveals that the short H-α1 helix moves nearly 5 Å inward upon substrate binding, and a conserved Tyr flips to point its hydroxyl group into the active site.

MeSH terms

  • Apoproteins / chemistry*
  • Apoproteins / genetics
  • Apoproteins / metabolism
  • Catalytic Domain
  • Citrus sinensis / chemistry*
  • Citrus sinensis / enzymology
  • Cloning, Molecular
  • Crystallography, X-Ray
  • Cyclohexenes / chemistry*
  • Cyclohexenes / metabolism
  • Diphosphates / chemistry
  • Diphosphates / metabolism
  • Diterpenes / chemistry
  • Diterpenes / metabolism
  • Enzyme Assays
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Intramolecular Lyases / chemistry*
  • Intramolecular Lyases / genetics
  • Intramolecular Lyases / metabolism
  • Kinetics
  • Limonene
  • Mentha spicata / chemistry
  • Mentha spicata / enzymology
  • Models, Molecular
  • Mutagenesis, Site-Directed
  • Mutation
  • Plant Proteins / chemistry*
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Protein Domains
  • Protein Structure, Secondary
  • Recombinant Fusion Proteins / chemistry*
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Stereoisomerism
  • Terpenes / chemistry*
  • Terpenes / metabolism

Substances

  • Apoproteins
  • Cyclohexenes
  • Diphosphates
  • Diterpenes
  • Plant Proteins
  • Recombinant Fusion Proteins
  • Terpenes
  • geranyl diphosphate
  • Limonene
  • Intramolecular Lyases
  • pinene cyclase I