' Pseudoflavonifractor phocaeensis' gen. nov., sp. nov., isolated from human left colon

doi:10.1016/j.nmni.2016.12.012

. 2016 Dec 13:17:15-17.

doi: 10.1016/j.nmni.2016.12.012. eCollection 2017 May.

' Pseudoflavonifractor phocaeensis' gen. nov., sp. nov., isolated from human left colon

D Ricaboni¹, M Mailhe², A Benezech³, C Andrieu², P-E Fournier², D Raoult²

Affiliations

¹ Aix-Marseille Université, URMITE, UM63, CNRS7278, IRD198, Inserm 1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Marseille, France; Department of Biomedical and Clinical Sciences, 3rd Division of Clinical Infectious Disease, University of Milan, Luigi Sacco Hospital, Italy.
² Aix-Marseille Université, URMITE, UM63, CNRS7278, IRD198, Inserm 1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Marseille, France.
³ Service de Gastroenterologie, Hopital Nord, Assistance Publique-Hopitaux de Marseille, Marseille, France.

PMID: 28275431
PMCID: PMC5328723
DOI: 10.1016/j.nmni.2016.12.012

Free PMC article

' Pseudoflavonifractor phocaeensis' gen. nov., sp. nov., isolated from human left colon

D Ricaboni et al. New Microbes New Infect. 2016.

Free PMC article

. 2016 Dec 13:17:15-17.

doi: 10.1016/j.nmni.2016.12.012. eCollection 2017 May.

Authors

D Ricaboni¹, M Mailhe², A Benezech³, C Andrieu², P-E Fournier², D Raoult²

Affiliations

¹ Aix-Marseille Université, URMITE, UM63, CNRS7278, IRD198, Inserm 1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Marseille, France; Department of Biomedical and Clinical Sciences, 3rd Division of Clinical Infectious Disease, University of Milan, Luigi Sacco Hospital, Italy.
² Aix-Marseille Université, URMITE, UM63, CNRS7278, IRD198, Inserm 1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de médecine, Marseille, France.
³ Service de Gastroenterologie, Hopital Nord, Assistance Publique-Hopitaux de Marseille, Marseille, France.

PMID: 28275431
PMCID: PMC5328723
DOI: 10.1016/j.nmni.2016.12.012

Abstract

We describe here characteristics of 'Pseudoflavonifractor phocaeensis' strain Marseille-P3064^T, which was isolated from a human left colon wash sample.

Keywords: Culturomics; human gut; microbiota; taxonogenomics; ‘Pseudoflavonifractor phocaeensis’.

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Figures

**Fig. 1**
Phylogenetic tree showing position of ‘*Pseudoflavonifractor phocaeensis*’ strain Marseille-P3064^T relative to other phylogenetically close neighbours. Sequences were aligned using CLUSTALW, and phylogenetic inferences were obtained using maximum-likelihood method within MEGA software. Numbers at nodes are percentages of bootstrap values obtained by repeating analysis 1000 times to generate majority consensus tree. Only bootstraps scores of at least 90 were retained.

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References

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1. Seng P., Abat C., Rolain J.M., Colson P., Lagier J.C., Gouriet F. Identification of rare pathogenic bacteria in a clinical microbiology laboratory: impact of matrix-assisted laser desorption ionization–time of flight mass spectrometry. J Clin Microbiol. 2013;51:2182–2194. - PMC - PubMed
1. Drancourt M., Bollet C., Carlioz A., Martelin R., Gayral J.P., Raoult D. 16S ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates. J Clin Microbiol. 2000;38:3623–3630. - PMC - PubMed
1. Tissier H. Recherche sur la flore intestinale normale des enfants âgés d'un an à cinq ans. Ann Inst Pasteur (Paris) 1908;22:189–208.
1. Carlier J.P., Bedora-Faure M., K'ouas G., Alauzet C., Mory F. Proposal to unify Clostridium orbiscindens Winter et al. 1991 and Eubacterium plautii (Séguin 1928) Hofstad and Aasjord 1982, with description of Flavonifractor plautii gen. nov., comb. nov., and reassignment of Bacteroides capillosus to Pseudoflavonifractor capillosus gen. nov., comb. nov. Int J Syst Evol Microbiol. 2010;60:585–590. - PubMed

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[1] Lagier J.C., Hugon P., Khelaifia S., Fournier P.E., La Scola B., Raoult D. The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota. Clin Microbiol Rev. 2015;28:237–264. - PMC - PubMed

[2] Lagier J.C., Hugon P., Khelaifia S., Fournier P.E., La Scola B., Raoult D. The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota. Clin Microbiol Rev. 2015;28:237–264. - PMC - PubMed

[3] Seng P., Abat C., Rolain J.M., Colson P., Lagier J.C., Gouriet F. Identification of rare pathogenic bacteria in a clinical microbiology laboratory: impact of matrix-assisted laser desorption ionization–time of flight mass spectrometry. J Clin Microbiol. 2013;51:2182–2194. - PMC - PubMed

[4] Seng P., Abat C., Rolain J.M., Colson P., Lagier J.C., Gouriet F. Identification of rare pathogenic bacteria in a clinical microbiology laboratory: impact of matrix-assisted laser desorption ionization–time of flight mass spectrometry. J Clin Microbiol. 2013;51:2182–2194. - PMC - PubMed

[5] Drancourt M., Bollet C., Carlioz A., Martelin R., Gayral J.P., Raoult D. 16S ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates. J Clin Microbiol. 2000;38:3623–3630. - PMC - PubMed

[6] Drancourt M., Bollet C., Carlioz A., Martelin R., Gayral J.P., Raoult D. 16S ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates. J Clin Microbiol. 2000;38:3623–3630. - PMC - PubMed

[7] Tissier H. Recherche sur la flore intestinale normale des enfants âgés d'un an à cinq ans. Ann Inst Pasteur (Paris) 1908;22:189–208.

[8] Tissier H. Recherche sur la flore intestinale normale des enfants âgés d'un an à cinq ans. Ann Inst Pasteur (Paris) 1908;22:189–208.

[9] Carlier J.P., Bedora-Faure M., K'ouas G., Alauzet C., Mory F. Proposal to unify Clostridium orbiscindens Winter et al. 1991 and Eubacterium plautii (Séguin 1928) Hofstad and Aasjord 1982, with description of Flavonifractor plautii gen. nov., comb. nov., and reassignment of Bacteroides capillosus to Pseudoflavonifractor capillosus gen. nov., comb. nov. Int J Syst Evol Microbiol. 2010;60:585–590. - PubMed

[10] Carlier J.P., Bedora-Faure M., K'ouas G., Alauzet C., Mory F. Proposal to unify Clostridium orbiscindens Winter et al. 1991 and Eubacterium plautii (Séguin 1928) Hofstad and Aasjord 1982, with description of Flavonifractor plautii gen. nov., comb. nov., and reassignment of Bacteroides capillosus to Pseudoflavonifractor capillosus gen. nov., comb. nov. Int J Syst Evol Microbiol. 2010;60:585–590. - PubMed

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' Pseudoflavonifractor phocaeensis' gen. nov., sp. nov., isolated from human left colon

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' Pseudoflavonifractor phocaeensis' gen. nov., sp. nov., isolated from human left colon

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