Amide proton exchange in the alpha-amylase polypeptide inhibitor Tendamistat studied by two-dimensional 1H nuclear magnetic resonance

Biochemistry. 1987 Oct 6;26(20):6488-93. doi: 10.1021/bi00394a030.

Abstract

The individual amide proton exchange rates in Tendamistat at pH 3.0 and 50 degrees C were measured by using two-dimensional 1H nuclear magnetic resonance. Overall, it was found that the distribution of exchange rates along the sequence is dominated by the interstrand hydrogen bonds of the beta-sheet structures. The slowly exchanging protons in the core of the two beta-sheets were shown to exchange via an EX2 mechanism. Further analysis of the data indicates that different large-scale structure fluctuations are responsible for the exchange from the two beta-sheets, even though the three-dimensional structure of Tendamistat appears to consist of a single structural domain.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amides
  • Amino Acid Sequence
  • Hydrogen
  • Hydrogen-Ion Concentration
  • Magnetic Resonance Spectroscopy
  • Peptides*
  • Protons
  • alpha-Amylases / antagonists & inhibitors*

Substances

  • Amides
  • Peptides
  • Protons
  • Hydrogen
  • alpha-Amylases
  • tendamistate