Extensive translation of circular RNAs driven by N 6-methyladenosine

Cell Res. 2017 May;27(5):626-641. doi: 10.1038/cr.2017.31. Epub 2017 Mar 10.

Abstract

Extensive pre-mRNA back-splicing generates numerous circular RNAs (circRNAs) in human transcriptome. However, the biological functions of these circRNAs remain largely unclear. Here we report that N6-methyladenosine (m6A), the most abundant base modification of RNA, promotes efficient initiation of protein translation from circRNAs in human cells. We discover that consensus m6A motifs are enriched in circRNAs and a single m6A site is sufficient to drive translation initiation. This m6A-driven translation requires initiation factor eIF4G2 and m6A reader YTHDF3, and is enhanced by methyltransferase METTL3/14, inhibited by demethylase FTO, and upregulated upon heat shock. Further analyses through polysome profiling, computational prediction and mass spectrometry reveal that m6A-driven translation of circRNAs is widespread, with hundreds of endogenous circRNAs having translation potential. Our study expands the coding landscape of human transcriptome, and suggests a role of circRNA-derived proteins in cellular responses to environmental stress.

MeSH terms

  • Adenosine / analogs & derivatives*
  • Adenosine / metabolism
  • Eukaryotic Initiation Factor-3 / metabolism
  • Eukaryotic Initiation Factor-4G / metabolism
  • HeLa Cells
  • Humans
  • Nucleotide Motifs / genetics
  • Peptides / chemistry
  • Peptides / metabolism
  • Protein Biosynthesis*
  • RNA / metabolism*
  • RNA, Circular
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Tandem Mass Spectrometry
  • Transcriptome / genetics

Substances

  • Eukaryotic Initiation Factor-3
  • Eukaryotic Initiation Factor-4G
  • Peptides
  • RNA, Circular
  • RNA, Messenger
  • N6-methyladenosine (m6A)
  • RNA
  • Adenosine