Complete genome sequence of a novel avastrovirus in goose

Arch Virol. 2017 Jul;162(7):2135-2139. doi: 10.1007/s00705-017-3297-1. Epub 2017 Mar 18.

Abstract

We report the complete genome sequence of a new avastrovirus of goose-origin (FLX). The 7299-nt-long genome consisted of three overlapping open reading frames (ORFs) that were in different reading frames. Pairwise comparisons showed that the FLX genome was 59% identical to its closest relatives and that the levels of amino acid identity shared by FLX with other astroviruses did not exceed 54% in ORF1a, 66% in ORF1b, and 50% in ORF2, respectively. Phylogenetic analysis based on the amino acid sequence of the full-length ORF2 demonstrated that FLX was highly divergent from all other avastroviruses. At the amino acid level the complete capsid region of FLX shared genetic distances of 0.574-0.719 with three official avastrovirus species, suggesting that it can be classified as a member of a novel species in the genus Avastrovirus.

MeSH terms

  • Animals
  • Astroviridae Infections / virology*
  • Avastrovirus / classification*
  • Avastrovirus / genetics
  • Avastrovirus / isolation & purification
  • Capsid Proteins / genetics
  • China
  • Geese / virology*
  • Genome, Viral
  • Open Reading Frames
  • Phylogeny*
  • Poultry Diseases / virology*

Substances

  • Capsid Proteins