Transcriptome profiling of Arabian horse blood during training regimens

Katarzyna Ropka-Molik; Monika Stefaniuk-Szmukier; Kacper Żukowski; Katarzyna Piórkowska; Artur Gurgul; Monika Bugno-Poniewierska

doi:10.1186/s12863-017-0499-1

Transcriptome profiling of Arabian horse blood during training regimens

BMC Genet. 2017 Apr 5;18(1):31. doi: 10.1186/s12863-017-0499-1.

Authors

Katarzyna Ropka-Molik¹, Monika Stefaniuk-Szmukier², Kacper Żukowski³, Katarzyna Piórkowska⁴, Artur Gurgul⁴, Monika Bugno-Poniewierska⁴

Affiliations

¹ Department of Genomics and Animal Molecular Biology, National Research Institute of Animal Production, Balice, Poland. katarzyna.ropka@izoo.krakow.pl.
² Department of Horse Breeding, Institute of Animal Science, University of Agriculture in Cracow, Kracow, Poland.
³ Department of Animal Genetics and Breeding, National Research Institute of Animal Production, Balice, Poland.
⁴ Department of Genomics and Animal Molecular Biology, National Research Institute of Animal Production, Balice, Poland.

Abstract

Background: Arabian horses are believed to be one of the oldest and most influential horse breeds in the world. Blood is the main tissue involved in maintaining body homeostasis, and it is considered a marker of the processes taking place in the other tissues. Thus, the aim of our study was to identify the genetic basis of changes occurring in the blood of Arabian horses subjected to a training regimen and to compare the global gene expression profiles between different training periods (T₁: after a slow canter phase that is considered a conditioning phase, T₂: after an intense gallop phase, and T₃: at the end of the racing season) and between trained and untrained horses (T₀). RNA sequencing was performed on 37 samples with a 75-bp single-end run on a HiScanSQ platform (Illumina), and differentially expressed genes (DEGs) were identified based on DESeq2 (v1.11.25) software.

Results: An increase in the number of DEGs between subsequent training periods was observed, and the highest amount of DEGs (440) was detected between untrained horses (T₀) and horses at the end of the racing season (T₃). The comparisons of the T₂ vs. T₃ transcriptomes and the T₀ vs. T₃ transcriptomes showed a significant gain of up-regulated genes during long-term exercise (up-regulation of 266 and 389 DEGs in the T₃ period compared to T₂ and T₀, respectively). Forty differentially expressed genes were detected between the T₁ and T₂ periods, and 296 between T₂ and T₃. Functional annotation showed that the most abundant genes up-regulated in exercise were involved in pathways regulating cell cycle (PI3K-Akt signalling pathway), cell communication (cAMP-dependent pathway), proliferation, differentiation and apoptosis, as well as immunity processes (Jak-STAT signalling pathway).

Conclusions: We investigated whether training causes permanent transcriptome changes in horse blood as a reflection of adaptation to conditioning and the maintenance of fitness to compete in flat races. The present study identified the overrepresented molecular pathways and genes that are essential for maintaining body homeostasis during long-term exercise in Arabian horses. Selected DEGs should be further investigated as markers that are potentially associated with racing performance in Arabian horses.

Keywords: Arabian horse; Blood transcriptome; Exercise adaptation; RNA-seq; Training.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Animals
Cell Cycle
DNA / blood*
Gene Expression Profiling / veterinary*
Gene Expression Regulation
Gene Regulatory Networks
Horses / classification
Horses / genetics*
Physical Conditioning, Animal*
Sequence Analysis, RNA / veterinary
Software

Substances

DNA