Protein conformational dynamics studied by 15 N and 1 H R relaxation dispersion: Application to wild-type and G53A ubiquitin crystals

Solid State Nucl Magn Reson. 2017 Oct;87:86-95. doi: 10.1016/j.ssnmr.2017.04.002. Epub 2017 Apr 14.

Abstract

Solid-state NMR spectroscopy can provide site-resolved information about protein dynamics over many time scales. Here we combine protein deuteration, fast magic-angle spinning (~45-60kHz) and proton detection to study dynamics of ubiquitin in microcrystals, and in particular a mutant in a region that undergoes microsecond motions in a β-turn region in the wild-type protein. We use 15N R relaxation measurements as a function of the radio-frequency (RF) field strength, i.e. relaxation dispersion, to probe how the G53A mutation alters these dynamics. We report a population-inversion of conformational states: the conformation that in the wild-type protein is populated only sparsely becomes the predominant state. We furthermore explore the potential to use amide-1H R relaxation to obtain insight into dynamics. We show that while quantitative interpretation of 1H relaxation remains beyond reach under the experimental conditions, due to coherent contributions to decay, one may extract qualitative information about flexibility.

Keywords: Fast MAS; Protein dynamics; Proton detection; Proton relaxation; Solid-state NMR; Spin relaxation; β-turn.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Crystallography, X-Ray
  • Models, Molecular
  • Mutant Proteins / chemistry*
  • Mutant Proteins / genetics
  • Mutation*
  • Nuclear Magnetic Resonance, Biomolecular*
  • Protein Conformation
  • Ubiquitin / chemistry*
  • Ubiquitin / genetics

Substances

  • Mutant Proteins
  • Ubiquitin