Production, characterization, and assessment of a stable analog of the response regulator CheY-phosphate from Thermotoga maritima

Protein Sci. 2017 Aug;26(8):1547-1554. doi: 10.1002/pro.3180. Epub 2017 May 14.

Abstract

Phosphorylation of CheY promotes association with the flagellar motor and ultimately controls the directional bias of the motor. However, biochemical studies of activated CheY-phosphate have been challenging due to the rapid hydrolysis of the aspartyl-phosphate in vitro. An inert analog of Tm CheY-phosphate, phosphono-CheY, was synthesized by chemical modification and purified by cation-exchange chromatography. Changes in HPLC retention times, chemical assays for phosphate and free thiol, and mass spectrometry experiments demonstrate modification of Cys54 with a phosphonomethyl group. Additionally, a crystal structure showed electron density for the phosphonomethyl group at Cys54, consistent with a modification at that position. Subsequent biochemical experiments confirmed that protein crystals were phosphono-CheY. Isothermal titration calorimetry and fluorescence polarization binding assays demonstrated that phosphono-CheY bound a peptide derived from FliM, a native partner of CheY-phosphate, with a dissociation constant of ∼29 µM, at least sixfold more tightly than unmodified CheY. Taken together these results suggest that Tm phosphono-CheY is a useful and unique analog of Tm CheY-phosphate.

Keywords: chemotaxis; cysteine modification; phosphate-analog; two-component system.

MeSH terms

  • Amino Acid Sequence
  • Aspartic Acid / analogs & derivatives
  • Aspartic Acid / chemistry
  • Aspartic Acid / metabolism
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Binding Sites
  • Chemotaxis / physiology
  • Cloning, Molecular
  • Crystallography, X-Ray
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Flagella / chemistry
  • Flagella / metabolism
  • Gene Expression
  • Kinetics
  • Methyl-Accepting Chemotaxis Proteins / chemistry*
  • Methyl-Accepting Chemotaxis Proteins / genetics
  • Methyl-Accepting Chemotaxis Proteins / metabolism
  • Models, Molecular
  • Organophosphonates / chemistry*
  • Organophosphonates / metabolism
  • Peptides / chemistry*
  • Peptides / genetics
  • Peptides / metabolism
  • Phosphorylation
  • Protein Binding
  • Protein Conformation, alpha-Helical
  • Protein Conformation, beta-Strand
  • Protein Engineering
  • Protein Interaction Domains and Motifs
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Thermotoga maritima / chemistry*
  • Thermotoga maritima / genetics
  • Thermotoga maritima / metabolism

Substances

  • Bacterial Proteins
  • Methyl-Accepting Chemotaxis Proteins
  • Organophosphonates
  • Peptides
  • Recombinant Proteins
  • FliM protein, Bacteria
  • beta-aspartyl phosphate
  • Aspartic Acid