Whole Exome Sequencing in Eight Thai Patients With Leber Congenital Amaurosis Reveals Mutations in the CTNNA1 and CYP4V2 Genes

Invest Ophthalmol Vis Sci. 2017 Apr 1;58(4):2413-2420. doi: 10.1167/iovs.16-21322.

Abstract

Purpose: Our goal was to describe the clinical and molecular genetic findings in Thai patients with Leber congenital amaurosis (LCA).

Methods: Whole exome sequencing (WES) was performed in eight unrelated patients. All genes responsible for inherited retinal diseases (IRDs) based on RetNet were selected for analysis. Potentially causative variants were filtered through a bioinformatics pipeline and validated using Sanger sequencing. Segregation analysis of the causative genes was performed in family members when available.

Results: Eleven deleterious variants, six nonsense and five missense, were identified in seven genes: four LCA-associated genes (CEP290, IQCB1, NMNAT1, and RPGRIP1), one gene responsible for syndromic LCA (ALMS1), and two IRDs-related genes (CTNNA1 and CYP4V2). Clinical reassessment supported the diagnosis of syndromic LCA in those patients harboring potentially pathogenic variants in the ALMS1. Interestingly, two causative genes, CTNNA1 and CYP4V2, previously reported to cause butterfly-shaped pigment dystrophy (BSPD) and Bietti's crystalline dystrophy (BCD), respectively, were detected in two other patients. These two patients developed rapid and severe visual loss in contrast to BSPD and BCD patients in previous studies. The results of this study demonstrate that causative variants identified in the CTNNA1 and CYP4V2 genes are also associated with LCA.

Conclusions: This is the first report describing the molecular genetics and clinical manifestations of Thai patients with LCA. The present study expands the spectrum of LCA-associated genes, which is a benefit for molecular diagnosis. The identification of mutations in the CTNNA1 and CYP4V2 genes requires further elucidation in larger cohorts with LCA.

MeSH terms

  • Asians / genetics*
  • Child
  • Child, Preschool
  • Codon, Nonsense
  • Cytochrome P450 Family 4 / genetics*
  • DNA Mutational Analysis
  • Exome
  • Female
  • Genetic Predisposition to Disease*
  • Humans
  • Infant
  • Leber Congenital Amaurosis / genetics*
  • Male
  • Mutation*
  • Mutation, Missense
  • Thailand
  • alpha Catenin / genetics*

Substances

  • CTNNA1 protein, human
  • Codon, Nonsense
  • alpha Catenin
  • CYP4V2 protein, human
  • Cytochrome P450 Family 4