Cluster assembly in nitrogenase

Essays Biochem. 2017 May 9;61(2):271-279. doi: 10.1042/EBC20160071. Print 2017 May 9.

Abstract

The versatile enzyme system nitrogenase accomplishes the challenging reduction of N2and other substrates through the use of two main metalloclusters. For molybdenum nitrogenase, the catalytic component NifDK contains the [Fe8S7]-core P-cluster and a [MoFe7S9C-homocitrate] cofactor called the M-cluster. These chemically unprecedented metalloclusters play a critical role in the reduction of N2, and both originate from [Fe4S4] clusters produced by the actions of NifS and NifU. Maturation of P-cluster begins with a pair of these [Fe4S4] clusters on NifDK called the P*-cluster. An accessory protein NifZ aids in P-cluster fusion, and reductive coupling is facilitated by NifH in a stepwise manner to form P-cluster on each half of NifDK. For M-cluster biosynthesis, two [Fe4S4] clusters on NifB are coupled with a carbon atom in a radical-SAM dependent process, and concomitant addition of a 'ninth' sulfur atom generates the [Fe8S9C]-core L-cluster. On the scaffold protein NifEN, L-cluster is matured to M-cluster by the addition of Mo and homocitrate provided by NifH. Finally, matured M-cluster in NifEN is directly transferred to NifDK, where a conformational change locks the cofactor in place. Mechanistic insights into these fascinating biosynthetic processes are detailed in this chapter.

Keywords: M-cluster; NifDK; NifEN; Nitrogenase; P-cluster.

Publication types

  • Review
  • Research Support, N.I.H., Extramural

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Molybdoferredoxin / chemistry
  • Molybdoferredoxin / metabolism*
  • Nitrogenase / chemistry*
  • Nitrogenase / metabolism*
  • Oxidoreductases / chemistry
  • Oxidoreductases / metabolism

Substances

  • Bacterial Proteins
  • Molybdoferredoxin
  • NifU protein, Bacteria
  • Oxidoreductases
  • Nitrogenase
  • nitrogenase reductase