Trans-kingdom mimicry underlies ribosome customization by a poxvirus kinase

Nature. 2017 Jun 29;546(7660):651-655. doi: 10.1038/nature22814. Epub 2017 Jun 21.

Abstract

Ribosomes have the capacity to selectively control translation through changes in their composition that enable recognition of specific RNA elements. However, beyond differential subunit expression during development, evidence for regulated ribosome specification within individual cells has remained elusive. Here we report that a poxvirus kinase phosphorylates serine/threonine residues in the human small ribosomal subunit protein, receptor for activated C kinase (RACK1), that are not phosphorylated in uninfected cells or cells infected by other viruses. These modified residues cluster in an extended loop in RACK1, phosphorylation of which selects for translation of viral or reporter mRNAs with 5' untranslated regions that contain adenosine repeats, so-called polyA-leaders. Structural and phylogenetic analyses revealed that although RACK1 is highly conserved, this loop is variable and contains negatively charged amino acids in plants, in which these leaders act as translational enhancers. Phosphomimetics and inter-species chimaeras have shown that negative charge in the RACK1 loop dictates ribosome selectivity towards viral RNAs. By converting human RACK1 to a charged, plant-like state, poxviruses remodel host ribosomes so that adenosine repeats erroneously generated by slippage of the viral RNA polymerase confer a translational advantage. Our findings provide insight into ribosome customization through trans-kingdom mimicry and the mechanics of species-specific leader activity that underlie poxvirus polyA-leaders.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • 5' Untranslated Regions / genetics
  • Adenosine / metabolism
  • Amino Acid Sequence
  • Biological Mimicry*
  • DNA-Directed RNA Polymerases / metabolism
  • Humans
  • Models, Molecular
  • Neoplasm Proteins / metabolism*
  • Phosphorylation
  • Poly A / metabolism
  • Protein Biosynthesis*
  • RNA, Viral / genetics
  • RNA, Viral / metabolism*
  • Receptors for Activated C Kinase / metabolism*
  • Ribosomes / metabolism*
  • Vaccinia virus / enzymology*
  • Vaccinia virus / genetics
  • Viral Proteins / metabolism*

Substances

  • 5' Untranslated Regions
  • Neoplasm Proteins
  • RACK1 protein, human
  • RNA, Viral
  • Receptors for Activated C Kinase
  • VB1R protein, Vaccinia virus
  • Viral Proteins
  • Poly A
  • DNA-Directed RNA Polymerases
  • Adenosine