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. 2017 Oct;146:12-20.
doi: 10.1016/j.antiviral.2017.08.004. Epub 2017 Aug 10.

Global Update on the Susceptibility of Human Influenza Viruses to Neuraminidase Inhibitors, 2015-2016

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Free PMC article

Global Update on the Susceptibility of Human Influenza Viruses to Neuraminidase Inhibitors, 2015-2016

Larisa V Gubareva et al. Antiviral Res. .
Free PMC article

Abstract

Four World Health Organization (WHO) Collaborating Centres for Reference and Research on Influenza and one WHO Collaborating Centre for the Surveillance, Epidemiology and Control of Influenza (WHO CCs) assessed antiviral susceptibility of 14,330 influenza A and B viruses collected by WHO-recognized National Influenza Centres (NICs) between May 2015 and May 2016. Neuraminidase (NA) inhibition assay was used to determine 50% inhibitory concentration (IC50) data for NA inhibitors (NAIs) oseltamivir, zanamivir, peramivir and laninamivir. Furthermore, NA sequences from 13,484 influenza viruses were retrieved from public sequence databases and screened for amino acid substitutions (AAS) associated with reduced inhibition (RI) or highly reduced inhibition (HRI) by NAIs. Of the viruses tested by WHO CCs 93% were from three WHO regions: Western Pacific, the Americas and Europe. Approximately 0.8% (n = 113) exhibited either RI or HRI by at least one of four NAIs. As in previous seasons, the most common NA AAS was H275Y in A(H1N1)pdm09 viruses, which confers HRI by oseltamivir and peramivir. Two A(H1N1)pdm09 viruses carried a rare NA AAS, S247R, shown in this study to confer RI/HRI by the four NAIs. The overall frequency of A(H1N1)pdm09 viruses containing NA AAS associated with RI/HRI was approximately 1.8% (125/6915), which is slightly higher than in the previous 2014-15 season (0.5%). Three B/Victoria-lineage viruses contained a new AAS, NA H134N, which conferred HRI by zanamivir and laninamivir, and borderline HRI by peramivir. A single B/Victoria-lineage virus harboured NA G104E, which was associated with HRI by all four NAIs. The overall frequency of RI/HRI phenotype among type B viruses was approximately 0.6% (43/7677), which is lower than that in the previous season. Overall, the vast majority (>99%) of the viruses tested by WHO CCs were susceptible to all four NAIs, showing normal inhibition (NI). Hence, NAIs remain the recommended antivirals for treatment of influenza virus infections. Nevertheless, our data indicate that it is prudent to continue drug susceptibility monitoring using both NAI assay and sequence analysis.

Keywords: Inhibitor; Markers; Neuraminidase; Resistance; Surveillance; Susceptibility.

Figures

Fig. 1
Fig. 1
Influenza viruses collected and tested for phenotypic neuraminidase inhibitor (NAI) susceptibility during 2015–2016. A) Week of specimen collection and virus type/subtype/lineage; for specimens tested, peaks in specimen collection during the Southern Hemisphere winter and during the Northern Hemisphere winter were observed. B) Number of viruses tested for phenotypic susceptibility to the four NAIs by World Health Organization region. B/Yamagata-lineage haemagglutinin:B/Victoria-lineage neuraminidase reassortants are shown separately.
Fig. 2
Fig. 2
A) Number of viruses tested in the neuraminidase inhibition assays (NAI assay) over the 2012–2016 period. B) Proportion of viruses showing RI or HRI by neuraminidase inhibitors (NAIs) over the 2012–2016 period. Data compiled from the global studies reporting on viruses isolated during 2012–13 (Meijer et al., 2014), 2013–14 (Takashita et al., 2015b), 2014–15 (Hurt et al., 2016), and 2015–16 (current study). B/Yamagata-lineage haemagglutinin:B/Victoria-lineage neuraminidase reassortants are included in the proportion and number of B/Victoria-lineage viruses.
Fig. 3
Fig. 3
Column-scatter plots of log-transformed 50% inhibitory concentration (IC50) fold-change values. Data are presented by virus subtype or lineage [A) A(H1N1)pdm09; B) A(H3N2); C) B/Victoria-lineage; and, D) B/Yamagata-lineage] and neuraminidase inhibitor (labelled on the X-axis: oseltamivir, zanamivir, peramivir, laninamivir). Panel C) also contains B/Yamagata-lineage haemagglutinin:B/Victoria-lineage neuraminidase reassortants, of which the three with reduced inhibition are indicated with an asterix (*). The boxes indicate the 25–75 percentile and the whiskers stretch to the lowest and highest value within 1.5 times the interquartile region value from both the 25 and 75 percentile values respectively (Tukey's definition). The Y-axes have been split into 3 compartments according to the thresholds recommended by the World Health Organization Expert Working Group of GISRS for normal inhibition (NI) (A viruses <10-fold; B viruses <5-fold), reduced inhibition (RI) (A viruses 10- to 100-fold; B viruses 5- to 50-fold), and highly reduced inhibition (HRI) (A viruses >100-fold; B viruses >50-fold). For RI and HRI viruses that have been sequenced the determined AAS are shown; amino acid position numbering is A subtype- and B type-specific. All viruses were tested for susceptibility to oseltamivir and zanamivir but not all, including some variants, were tested against peramivir and laninamivir.

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