The Mechanism of Regulation of Pantothenate Biosynthesis by the PanD-PanZ·AcCoA Complex Reveals an Additional Mode of Action for the Antimetabolite N-Pentyl Pantothenamide (N5-Pan)

Biochemistry. 2017 Sep 19;56(37):4931-4939. doi: 10.1021/acs.biochem.7b00509. Epub 2017 Sep 7.

Abstract

The antimetabolite pentyl pantothenamide has broad spectrum antibiotic activity but exhibits enhanced activity against Escherichia coli. The PanDZ complex has been proposed to regulate the pantothenate biosynthetic pathway in E. coli by limiting the supply of β-alanine in response to coenzyme A concentration. We show that formation of such a complex between activated aspartate decarboxylase (PanD) and PanZ leads to sequestration of the pyruvoyl cofactor as a ketone hydrate and demonstrate that both PanZ overexpression-linked β-alanine auxotrophy and pentyl pantothenamide toxicity are due to formation of this complex. This both demonstrates that the PanDZ complex regulates pantothenate biosynthesis in a cellular context and validates the complex as a target for antibiotic development.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetyl Coenzyme A / analogs & derivatives
  • Acetyl Coenzyme A / chemistry
  • Acetyl Coenzyme A / metabolism*
  • Amino Acid Substitution
  • Anti-Bacterial Agents / pharmacology
  • Antimetabolites / pharmacology
  • Binding Sites
  • Calorimetry
  • Carboxy-Lyases / chemistry
  • Carboxy-Lyases / genetics
  • Carboxy-Lyases / metabolism*
  • Coenzyme A / chemical synthesis
  • Coenzyme A / chemistry
  • Coenzyme A / metabolism
  • Crystallography, X-Ray
  • Enzyme Activation / drug effects
  • Escherichia coli K12 / drug effects
  • Escherichia coli K12 / growth & development
  • Escherichia coli K12 / metabolism*
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Gene Deletion
  • Glutamate Decarboxylase / antagonists & inhibitors
  • Glutamate Decarboxylase / chemistry
  • Glutamate Decarboxylase / genetics
  • Glutamate Decarboxylase / metabolism*
  • Kinetics
  • Models, Molecular*
  • Mutation
  • Pantothenic Acid / analogs & derivatives
  • Pantothenic Acid / pharmacology
  • Protein Conformation
  • Protein Multimerization
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Titrimetry

Substances

  • Anti-Bacterial Agents
  • Antimetabolites
  • Escherichia coli Proteins
  • N-pentylpantothenamide
  • PanZ protein, E coli
  • Recombinant Proteins
  • Pantothenic Acid
  • Acetyl Coenzyme A
  • Carboxy-Lyases
  • PanD protein, E coli
  • aspartate-alpha-decarboxylase
  • Glutamate Decarboxylase
  • Coenzyme A