Biallelic variants in LINGO1 are associated with autosomal recessive intellectual disability, microcephaly, speech and motor delay

Genet Med. 2018 Jul;20(7):778-784. doi: 10.1038/gim.2017.113. Epub 2017 Aug 24.


Purpose: To elucidate the novel molecular cause in two unrelated consanguineous families with autosomal recessive intellectual disability.

Methods: A combination of homozygosity mapping and exome sequencing was used to locate the plausible genetic defect in family F162, while only exome sequencing was followed in the family PKMR65. The protein 3D structure was visualized with the University of California-San Francisco Chimera software.

Results: All five patients from both families presented with severe intellectual disability, aggressive behavior, and speech and motor delay. Four of the five patients had microcephaly. We identified homozygous missense variants in LINGO1, p.(Arg290His) in family F162 and p.(Tyr288Cys) in family PKMR65. Both variants were predicted to be pathogenic, and segregated with the phenotype in the respective families. Molecular modeling of LINGO1 suggests that both variants interfere with the glycosylation of the protein.

Conclusion: LINGO1 is a transmembrane receptor, predominantly found in the central nervous system. Published loss-of-function studies in mouse and zebrafish have established a crucial role of LINGO1 in normal neuronal development and central nervous system myelination by negatively regulating oligodendrocyte differentiation and neuronal survival. Taken together, our results indicate that biallelic LINGO1 missense variants cause autosomal recessive intellectual disability in humans.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Chromosome Mapping / methods
  • Exome Sequencing
  • Family
  • Female
  • Gene Frequency / genetics
  • Genotype
  • Homozygote
  • Humans
  • Intellectual Disability / genetics*
  • Language Development Disorders / genetics
  • Male
  • Membrane Proteins / genetics*
  • Membrane Proteins / physiology
  • Microcephaly / genetics
  • Motor Activity / genetics
  • Mutation, Missense / genetics
  • Nerve Tissue Proteins / genetics*
  • Nerve Tissue Proteins / physiology
  • Pakistan
  • Pedigree
  • Phenotype
  • Sequence Analysis, Protein


  • LINGO1 protein, human
  • Membrane Proteins
  • Nerve Tissue Proteins