The complete genome sequence of human adenovirus 84, a highly recombinant new Human mastadenovirus D type with a unique fiber gene

Virus Res. 2017 Oct 15:242:79-84. doi: 10.1016/j.virusres.2017.09.012. Epub 2017 Sep 18.

Abstract

A novel human adenovirus was isolated from a pediatric case of acute respiratory disease in Panama City, Panama in 2011. The clinical isolate was initially identified as an intertypic recombinant based on hexon and fiber gene sequencing. Based on the analysis of its complete genome sequence, the novel complex recombinant Human mastadenovirus D (HAdV-D) strain was classified into a new HAdV type: HAdV-84, and it was designated Adenovirus D human/PAN/P309886/2011/84[P43H17F84]. HAdV-D types possess usually an ocular or gastrointestinal tropism, and respiratory association is scarcely reported. The virus has a novel fiber type, most closely related to, but still clearly distant from that of HAdV-36. The predicted fiber is hypothesised to bind sialic acid with lower affinity compared to HAdV-37. Bioinformatic analysis of the complete genomic sequence of HAdV-84 revealed multiple homologous recombination events and provided deeper insight into HAdV evolution.

Keywords: Acute respiratory disease; Complete genome; HAdV-84; HAdV-D; Homologous recombination; Human adenovirus.

MeSH terms

  • Adenoviridae Infections / virology
  • Adenoviruses, Human / genetics*
  • Adenoviruses, Human / isolation & purification
  • Capsid Proteins / genetics*
  • Capsid Proteins / metabolism
  • Genome, Viral*
  • Genotype*
  • Humans
  • Panama
  • Phylogeny
  • Protein Binding
  • Recombination, Genetic
  • Sequence Analysis, DNA*
  • Sequence Homology
  • Sialic Acids / metabolism

Substances

  • Capsid Proteins
  • Sialic Acids
  • hexon capsid protein, Adenovirus