ALIGNSEC: viewing protein secondary structure predictions within large multiple sequence alignments

Gilbert Deléage

doi:10.1093/bioinformatics/btx521

ALIGNSEC: viewing protein secondary structure predictions within large multiple sequence alignments

Bioinformatics. 2017 Dec 15;33(24):3991-3992. doi: 10.1093/bioinformatics/btx521.

Author

Gilbert Deléage¹

Affiliation

¹ Lyon University-CNRS, LBTI-UMR5305, Institute of Biology and Chemistry of Proteins, 7 passage du Vercors, 69367 Lyon cedex 07, France.

PMID: 28961944
DOI: 10.1093/bioinformatics/btx521

Abstract

Motivation: ALIGNSEC is a module within ANTHEPROT designed for the interactive display, edition and printing of large-scale multiple alignments integrating secondary structure predictions.

Availability and implementation: The ALIGNSEC module is part of the ANTHEPROT package (http://antheprot-pbil.ibcp.fr) which can be used freely for academic users. It is running on Windows Operating systems. For commercial use, please contact the author.

Contact: gilbert.deleage@ibcp.fr.

MeSH terms

Computer Simulation
Protein Structure, Secondary*
Sequence Alignment / methods*
Software*