Molecular cloning and complete nucleotide sequence of an adult T cell leukaemia virus/human T cell leukaemia virus type I (ATLV/HTLV-I) isolate of Caribbean origin: relationship to other members of the ATLV/HTLV-I subgroup

J Gen Virol. 1988 Jul:69 ( Pt 7):1695-710. doi: 10.1099/0022-1317-69-7-1695.

Abstract

We report the first complete nucleotide sequence of an adult T cell leukaemia virus/human T cell leukaemia virus type I (ATLV/HTLV-I) isolate from a British patient of Caribbean origin. Sequence comparisons of our proviral clone (HS-35) with other molecular clones are shown. We note the strong sequence conservation between isolates of Caribbean and Japanese origin (2.3% divergence), but demonstrate the higher homologies existing between isolates originating from similar geographical areas (approximately 1% divergence). Implications for the origin, evolution and dissemination of the ATLV/HTLV-I subgroup are discussed. Analysis of defective proviral clones isolated from the same genomic library is also reported, and suggests a pattern of proviral sequence deletions during the biogenesis of defective proviruses.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Deltaretrovirus / classification
  • Deltaretrovirus / genetics*
  • Deltaretrovirus / isolation & purification
  • Deltaretrovirus Infections / ethnology
  • Deltaretrovirus Infections / microbiology*
  • England
  • Genes, Viral*
  • Humans
  • Molecular Sequence Data
  • Phylogeny
  • Proviruses / genetics
  • Sequence Homology, Nucleic Acid
  • Viral Envelope Proteins / genetics
  • West Indies / ethnology

Substances

  • Viral Envelope Proteins

Associated data

  • GENBANK/D00294