TILLING in Brachypodium distachyon

Methods Mol Biol. 2018:1667:173-186. doi: 10.1007/978-1-4939-7278-4_13.

Abstract

TILLING is a low-cost screening method that allows for identification of mutations in a gene-of-interest within a range of few base pairs. TILLING can be applied to mutant populations or to plant collections of cultivars, landraces or crop wild relatives (Eco-TILLING). The method is based on the Cel1 enzyme cleavage of mismatches in PCR products amplified with labeled primers. The cleavage can be detected due to the labeled primers by different methods including capillary electrophoresis. Here, we introduce the development of the mutant population BRACHYLIFE and present a Brachypodium TILLING protocol based on fluorescing primers for PCR, enzymatic cleavage, and detection with Applied Biosystems 3130xl Genetic Analyzer.

Keywords: Cel1; Induced mutation; Mutation detection; Sodium azide.

MeSH terms

  • Brachypodium / genetics*
  • DNA Mutational Analysis / methods*
  • DNA, Plant / genetics*
  • Mutagenesis*
  • Mutation*
  • Polymerase Chain Reaction / methods
  • Software

Substances

  • DNA, Plant