Pectobacterium Polaris Sp. Nov., Isolated From Potato (Solanum Tuberosum)

Int J Syst Evol Microbiol. 2017 Dec;67(12):5222-5229. doi: 10.1099/ijsem.0.002448. Epub 2017 Oct 25.

Abstract

The genus Pectobacterium, which belongs to the bacterial family Enterobacteriaceae, contains numerous species that cause soft rot diseases in a wide range of plants. The species Pectobacterium carotovorum is highly heterogeneous, indicating a need for re-evaluation and a better classification of the species. PacBio was used for sequencing of two soft-rot-causing bacterial strains (NIBIO1006T and NIBIO1392), initially identified as P. carotovorumstrains by fatty acid analysis and sequencing of three housekeeping genes (dnaX, icdA and mdh). Their taxonomic relationship to other Pectobacterium species was determined and the distance from any described species within the genus Pectobacterium was less than 94 % average nucleotide identity (ANI). Based on ANI, phylogenetic data and genome-to-genome distance, strains NIBIO1006T, NIBIO1392 and NCPPB3395 are suggested to represent a novel species of the genus Pectobacterium, for which the name Pectobacterium polaris sp. nov. is proposed. The type strain is NIBIO1006T (=DSM 105255T=NCPPB 4611T).

Keywords: Enterobacteriaceae; Solanum tuberosum; genomics; phylogenomics; potato pathogen; taxonomy.

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Norway
  • Nucleic Acid Hybridization
  • Pectobacterium / classification*
  • Pectobacterium / genetics
  • Pectobacterium / isolation & purification
  • Phylogeny*
  • Plant Diseases / microbiology*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Solanum tuberosum / microbiology*

Substances

  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S