Whole-exome sequencing in a Japanese family with highly aggregated diabetes identifies a candidate susceptibility mutation in ADAMTSL3

Diabetes Res Clin Pract. 2018 Jan;135:143-149. doi: 10.1016/j.diabres.2017.11.012. Epub 2017 Nov 21.

Abstract

Aims: The aim of this study was to clarify the genetic background of a family with multiple cases of diabetes accompanied by absolute insulin deficiency using whole-exome sequencing (WES).

Methods: In a Japanese family, WES was performed in four affected members with absolute insulin deficiency and two unaffected members. We focused on variants that were predicted to be disease-causing by bioinformatics and were shared by all of the four affected members but were not present in the two unaffected members. We assumed that the familial clustering of diabetes was caused by rare variants excluding those with allele frequency of more than 0.01 in the 1000 Genomes Project, the Human Genetic Variation Database, or a cohort of 105 normoglycemic controls in Japan. The rare variants were then genotyped in 2102 Japanese without diabetes and 119 Japanese with diabetes.

Results: Among the variants detected by WES and predicted to be disease-causing, 16 variants shared by all of the four of the affected members and not present in the two unaffected members were confirmed to be rare. Genotyping of the 16 rare variants revealed that only A137T in ADAMTSL3 (rs181914721) was observed more frequently in the 119 subjects with diabetes than in the 105 normoglycemic controls, and the allele frequency of the variant was significantly higher in the 119 subjects with diabetes than in another cohort of 2102 Japanese without diabetes.

Conclusions: We propose that A137T in ADAMTSL3 is a candidate mutation for susceptibility to diabetes in this family and in the Japanese population.

Keywords: ADAMTSL3; Rare variant; Whole-exome sequencing (WES).

MeSH terms

  • ADAMTS Proteins / genetics*
  • Adult
  • Diabetes Mellitus / genetics*
  • Exome / genetics*
  • Extracellular Matrix Proteins / genetics*
  • Female
  • Genetic Predisposition to Disease
  • Genotype
  • Humans
  • Japan
  • Male
  • Middle Aged
  • Mutation
  • Pedigree

Substances

  • ADAMTSL3 protein, human
  • Extracellular Matrix Proteins
  • ADAMTS Proteins