Time-gated detection of protein-protein interactions with transcriptional readout

Elife. 2017 Nov 30;6:e30233. doi: 10.7554/eLife.30233.

Abstract

Transcriptional assays, such as yeast two-hybrid and TANGO, that convert transient protein-protein interactions (PPIs) into stable expression of transgenes are powerful tools for PPI discovery, screens, and analysis of cell populations. However, such assays often have high background and lose information about PPI dynamics. We have developed SPARK (Specific Protein Association tool giving transcriptional Readout with rapid Kinetics), in which proteolytic release of a membrane-tethered transcription factor (TF) requires both a PPI to deliver a protease proximal to its cleavage peptide and blue light to uncage the cleavage site. SPARK was used to detect 12 different PPIs in mammalian cells, with 5 min temporal resolution and signal ratios up to 37. By shifting the light window, we could reconstruct PPI time-courses. Combined with FACS, SPARK enabled 51 fold enrichment of PPI-positive over PPI-negative cells. Due to its high specificity and sensitivity, SPARK has the potential to advance PPI analysis and discovery.

Keywords: GPCR; LOV domain; TEV protease; Tango; cell biology; genetic selection; proximity-dependent labeling.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, N.I.H., Extramural

MeSH terms

  • HEK293 Cells
  • Humans
  • Protein Interaction Mapping / methods*
  • Proteins / metabolism*
  • Time Factors
  • Transcription, Genetic

Substances

  • Proteins