Genetic dissection of cyclic pyranopterin monophosphate biosynthesis in plant mitochondria

Biochem J. 2018 Jan 31;475(2):495-509. doi: 10.1042/BCJ20170559.

Abstract

Mitochondria play a key role in the biosynthesis of two metal cofactors, iron-sulfur (FeS) clusters and molybdenum cofactor (Moco). The two pathways intersect at several points, but a scarcity of mutants has hindered studies to better understand these links. We screened a collection of sirtinol-resistant Arabidopsis thaliana mutants for lines with decreased activities of cytosolic FeS enzymes and Moco enzymes. We identified a new mutant allele of ATM3 (ABC transporter of the mitochondria 3), encoding the ATP-binding cassette transporter of the mitochondria 3 (systematic name ABCB25), confirming the previously reported role of ATM3 in both FeS cluster and Moco biosynthesis. We also identified a mutant allele in CNX2, cofactor of nitrate reductase and xanthine dehydrogenase 2, encoding GTP 3',8-cyclase, the first step in Moco biosynthesis which is localized in the mitochondria. A single-nucleotide polymorphism in cnx2-2 leads to substitution of Arg88 with Gln in the N-terminal FeS cluster-binding motif. cnx2-2 plants are small and chlorotic, with severely decreased Moco enzyme activities, but they performed better than a cnx2-1 knockout mutant, which could only survive with ammonia as a nitrogen source. Measurement of cyclic pyranopterin monophosphate (cPMP) levels by LC-MS/MS showed that this Moco intermediate was below the limit of detection in both cnx2-1 and cnx2-2, and accumulated more than 10-fold in seedlings mutated in the downstream gene CNX5 Interestingly, atm3-1 mutants had less cPMP than wild type, correlating with previous reports of a similar decrease in nitrate reductase activity. Taken together, our data functionally characterize CNX2 and suggest that ATM3 is indirectly required for cPMP synthesis.

Keywords: iron–sulphur proteins; mitochondria; molybdenum; nitrate reductase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • ATP-Binding Cassette Transporters / genetics*
  • ATP-Binding Cassette Transporters / metabolism
  • Amino Acid Sequence
  • Ammonia / pharmacology
  • Arabidopsis / drug effects
  • Arabidopsis / genetics*
  • Arabidopsis / growth & development
  • Arabidopsis / metabolism
  • Arabidopsis Proteins / genetics*
  • Arabidopsis Proteins / metabolism
  • Chromatography, Liquid
  • Coenzymes / biosynthesis
  • Gene Deletion
  • Gene Expression Regulation, Plant*
  • Metalloproteins / biosynthesis
  • Mitochondria / metabolism*
  • Mitochondria / ultrastructure
  • Molybdenum Cofactors
  • Organophosphorus Compounds / metabolism*
  • Plant Cells / metabolism
  • Plant Cells / ultrastructure
  • Polymorphism, Single Nucleotide
  • Protein Isoforms / genetics
  • Protein Isoforms / metabolism
  • Pteridines
  • Pterins / metabolism*
  • Seedlings / drug effects
  • Seedlings / genetics
  • Seedlings / growth & development
  • Seedlings / metabolism
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Signal Transduction
  • Tandem Mass Spectrometry

Substances

  • ATM3 protein, Arabidopsis
  • ATP-Binding Cassette Transporters
  • Arabidopsis Proteins
  • Cnx protein, Arabidopsis
  • Coenzymes
  • Metalloproteins
  • Molybdenum Cofactors
  • Organophosphorus Compounds
  • Protein Isoforms
  • Pteridines
  • Pterins
  • nulibry
  • Ammonia
  • molybdenum cofactor