Na +-mimicking ligands stabilize the inactive state of leukotriene B 4 receptor BLT1

Nat Chem Biol. 2018 Mar;14(3):262-269. doi: 10.1038/nchembio.2547. Epub 2018 Jan 8.

Abstract

Most G-protein-coupled receptors (GPCRs) are stabilized in common in the inactive state by the formation of the sodium ion-centered water cluster with the conserved Asp2.50 inside the seven-transmembrane domain. We determined the crystal structure of the leukotriene B4 (LTB4) receptor BLT1 bound with BIIL260, a chemical bearing a benzamidine moiety. Surprisingly, the amidine group occupies the sodium ion and water locations, interacts with D662.50, and mimics the entire sodium ion-centered water cluster. Thus, BLT1 is fixed in the inactive state, and the transmembrane helices cannot change their conformations to form the active state. Moreover, the benzamidine molecule alone serves as a negative allosteric modulator for BLT1. As the residues involved in the benzamidine binding are widely conserved among GPCRs, the unprecedented inverse-agonist mechanism by the benzamidine moiety could be adapted to other GPCRs. Consequently, the present structure will enable the rational development of inverse agonists specific for each GPCR.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Allosteric Site
  • Amidines / chemistry
  • Animals
  • Aspartic Acid / chemistry
  • Binding Sites
  • Crystallography, X-Ray
  • Drug Design
  • Guinea Pigs
  • HEK293 Cells
  • Humans
  • Inositol Phosphates / chemistry
  • Leukotriene B4 / chemistry
  • Ligands
  • Protein Binding
  • Protein Domains
  • Receptors, Leukotriene B4 / chemistry*
  • Transforming Growth Factor alpha / metabolism

Substances

  • Amidines
  • Inositol Phosphates
  • LTB4R protein, human
  • Ligands
  • Receptors, Leukotriene B4
  • Transforming Growth Factor alpha
  • Leukotriene B4
  • Aspartic Acid