Novel RNA viruses within plant parasitic cyst nematodes

PLoS One. 2018 Mar 6;13(3):e0193881. doi: 10.1371/journal.pone.0193881. eCollection 2018.

Abstract

The study of invertebrate-and particularly nematode-viruses is emerging with the advancement of transcriptome sequencing. Five single-stranded RNA viruses have now been confirmed within the economically important soybean cyst nematode (SCN; Heterodera glycines). From previous research, we know these viruses to be widespread in greenhouse and field populations of SCN. Several of the SCN viruses were also confirmed within clover (H. trifolii) and beet (H. schachtii) cyst nematodes. In the presented study, we sequenced the transcriptomes of several inbred SCN populations and identified two previously undiscovered viral-like genomes. Both of these proposed viruses are negative-sense RNA viruses and have been named SCN nyami-like virus (NLV) and SCN bunya-like virus (BLV). Finally, we analyzed publicly available transcriptome data of two potato cyst nematode (PCN) species, Globodera pallida and G. rostochiensis. From these data, a third potential virus was discovered and called PCN picorna-like virus (PLV). PCN PLV is a positive-sense RNA virus, and to the best of our knowledge, is the first virus described within PCN. The presence of these novel viruses was confirmed via qRT-PCR, endpoint PCR, and Sanger sequencing with the exception of PCN PLV due to quarantine restrictions on the nematode host. While much work needs to be done to understand the biological and evolutionary significance of these viruses, they offer insight into nematode ecology and the possibility of novel nematode management strategies.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Beta vulgaris / parasitology
  • Gene Expression Profiling
  • Genome, Viral / genetics
  • Glycine max / parasitology
  • Medicago / parasitology
  • Nematoda / virology*
  • Plants / parasitology*
  • RNA Viruses* / genetics
  • Real-Time Polymerase Chain Reaction
  • Solanum tuberosum / parasitology

Grants and funding

This work was supported by the National Science Foundation, DGE-1252376 (www.nsf.gov). The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.