Mapping of the large RNA genome segment of infectious pancreatic necrosis virus by hybrid arrested translation

Virology. 1987 May;158(1):211-7. doi: 10.1016/0042-6822(87)90255-8.

Abstract

Segment A, the larger dsRNA segment of IPNV which encodes three of the four virus-coded polypeptides (preVP2, VP3, and NS) was cloned and physically mapped. The plus and minus RNA strands of the virus genome were separated and the A+ and B+ RNA strands were identified. A nested set of cDNA subclones, coterminal with the 5' end of A+ RNA, were used in hybrid arrested translation experiments. Hybrid arrest conditions which blocked the 5' two-thirds of A+ RNA allowed the in vitro synthesis of only VP3, while hybridization of the RNA to cDNA representing the 5' half of A+ RNA allowed the synthesis of both NS and VP3 but not of preVP2. In vitro translation of A+ RNA yielded all three polypeptides. It is, therefore, concluded that the order of the three polypeptides on A+ RNA is 5'-preVP2-NS-VP3-3'. These results imply that internal initiation of translation could take place on the RNA at least in vitro at sites located hundreds of nucleotides downstream from the first in-phase AUG codon near the 5' end.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cloning, Molecular
  • DNA
  • Fishes / microbiology
  • Genes, Viral*
  • Nucleic Acid Hybridization
  • Protein Biosynthesis
  • RNA, Double-Stranded / genetics
  • RNA, Viral / genetics*
  • Reoviridae / genetics*
  • Viral Nonstructural Proteins
  • Viral Proteins / genetics*
  • Viral Structural Proteins

Substances

  • RNA, Double-Stranded
  • RNA, Viral
  • Viral Nonstructural Proteins
  • Viral Proteins
  • Viral Structural Proteins
  • DNA