Limited hydrolysis of tRNA by phosphodiesterase

Hoppe Seylers Z Physiol Chem. 1975 Jul;356(7):1097-104. doi: 10.1515/bchm2.1975.356.2.1097.

Abstract

Digestion of tRNA by electrophoretically pure phosphodiesterase is limited to a short sequence of nucleotides at the 3'-terminus. On the average, four percent of all nucleotides can be released from tRNA. The optimum Mg2 concentration is 10mM and the optimum pH 9.2. The mode of action is a random attack by the enzyme on the substrate. The terminal AMP is completely removed at 15 degrees C after short incubation; about 400 mol of AMP were removed per min by 1 mol of enzyme. The following CMP residues are released much more slowly; at 15 degrees C incompletely, and at 37 degrees C more or less completely in 1 h. In about 50% of the tRNA molecules, the fourth nucleotide could be removed in very long incubations or with very high enzyme concentrations.

MeSH terms

  • Adenosine Monophosphate / metabolism
  • Base Sequence
  • Cytidine Monophosphate / metabolism
  • Escherichia coli / enzymology
  • Hydrogen-Ion Concentration
  • Hydrolysis
  • Magnesium / pharmacology
  • Nucleotidyltransferases / metabolism
  • Phosphoric Diester Hydrolases / metabolism*
  • RNA, Transfer / metabolism*

Substances

  • Adenosine Monophosphate
  • RNA, Transfer
  • Nucleotidyltransferases
  • Phosphoric Diester Hydrolases
  • Cytidine Monophosphate
  • Magnesium