A novel splice site variant in ITPR1 gene underlying recessive Gillespie syndrome

Am J Med Genet A. 2018 Jun;176(6):1427-1431. doi: 10.1002/ajmg.a.38704. Epub 2018 Apr 16.

Abstract

Gillespie syndrome (GLSP) is a rare congenital disorder characterized by partial aniridia, hypotonia, progressive cerebellar hypoplasia, nonprogressive ataxia, and intellectual disability. All causative variants to date affect the central or the 3'-terminal domains of ITPR1 gene and exhibit autosomal recessive or dominant inheritance pattern. We investigated by exome sequencing the molecular cause of GLSP in a family composed by consanguineous healthy parents, two affected siblings and one healthy son. We found the novel splice site variant c.278_279 + 2delACGT located at the 5'-end of ITPR1. The affected siblings were homozygotes, their parents heterozygous carriers and the variant was absent in the healthy son, indicating a recessive inheritance pattern. The deletion abolished the splice-donor site at exon 5/intron 5 junction, causing the skipping of exon 5 and the generation of a premature STOP codon. The mutation is predicted to result in the synthesis of a 64-amino acids nonfunctional protein. The mutant transcript comprised >96% of ITPR1 mRNA in the affected siblings, indicating that a small amount of wild-type transcript was still present. The novel autosomal recessive mutation here reported is the first variant affecting the ITPR1 N-terminal suppressor domain, thus extending the spectrum of the pathogenetic variants in GLSP and the range of the associated clinical manifestations.

Keywords: Gillespie; ITPR1; next generation sequencing; spinocerebellar ataxia; splicing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Aniridia / etiology
  • Aniridia / genetics*
  • Cerebellar Ataxia / etiology
  • Cerebellar Ataxia / genetics*
  • Child
  • Codon, Nonsense
  • Exons
  • Female
  • Frameshift Mutation*
  • Genes, Recessive
  • Homozygote
  • Humans
  • Inositol 1,4,5-Trisphosphate Receptors / chemistry
  • Inositol 1,4,5-Trisphosphate Receptors / genetics*
  • Inositol 1,4,5-Trisphosphate Receptors / metabolism
  • Intellectual Disability / etiology
  • Intellectual Disability / genetics*
  • Male
  • Pedigree
  • Protein Domains
  • RNA Splice Sites / genetics*

Substances

  • Codon, Nonsense
  • ITPR1 protein, human
  • Inositol 1,4,5-Trisphosphate Receptors
  • RNA Splice Sites

Supplementary concepts

  • Aniridia cerebellar ataxia mental deficiency