NGS testing for cardiomyopathy: Utility of adding RASopathy-associated genes

Hum Mutat. 2018 Jul;39(7):954-958. doi: 10.1002/humu.23535. Epub 2018 May 16.

Abstract

RASopathies include a group of syndromes caused by pathogenic germline variants in RAS-MAPK pathway genes and typically present with facial dysmorphology, cardiovascular disease, and musculoskeletal anomalies. Recently, variants in RASopathy-associated genes have been reported in individuals with apparently nonsyndromic cardiomyopathy, suggesting that subtle features may be overlooked. To determine the utility and burden of adding RASopathy-associated genes to cardiomyopathy panels, we tested 11 RASopathy-associated genes by next-generation sequencing (NGS), including NGS-based copy number variant assessment, in 1,111 individuals referred for genetic testing for hypertrophic cardiomyopathy (HCM) or dilated cardiomyopathy (DCM). Disease-causing variants were identified in 0.6% (four of 692) of individuals with HCM, including three missense variants in the PTPN11, SOS1, and BRAF genes. Overall, 36 variants of uncertain significance (VUSs) were identified, averaging ∼3VUSs/100 cases. This study demonstrates that adding a subset of the RASopathy-associated genes to cardiomyopathy panels will increase clinical diagnoses without significantly increasing the number of VUSs/case.

Keywords: BRAF; Noonan syndrome; PTPN11; RAF1 gain; RASopathy; SOS1; cardio-facio-cutaneous (CFC) syndrome; dilated cardiomyopathy (DCM); hypertrophic cardiomyopathy (HCM).

MeSH terms

  • Adolescent
  • Aged, 80 and over
  • Cardiomyopathy, Dilated / epidemiology
  • Cardiomyopathy, Dilated / genetics*
  • Cardiomyopathy, Dilated / physiopathology
  • Cardiomyopathy, Hypertrophic / epidemiology
  • Cardiomyopathy, Hypertrophic / genetics*
  • Cardiomyopathy, Hypertrophic / physiopathology
  • DNA Copy Number Variations / genetics
  • Female
  • Genetic Predisposition to Disease
  • Germ-Line Mutation / genetics
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Infant
  • Male
  • Middle Aged
  • Mitogen-Activated Protein Kinase Kinases / genetics
  • Noonan Syndrome / genetics
  • Noonan Syndrome / physiopathology
  • Protein Tyrosine Phosphatase, Non-Receptor Type 11 / genetics*
  • Proto-Oncogene Proteins B-raf / genetics*
  • SOS1 Protein / genetics*
  • Signal Transduction

Substances

  • SOS1 Protein
  • BRAF protein, human
  • Proto-Oncogene Proteins B-raf
  • Mitogen-Activated Protein Kinase Kinases
  • PTPN11 protein, human
  • Protein Tyrosine Phosphatase, Non-Receptor Type 11