Self-Resistance during Muraymycin Biosynthesis: a Complementary Nucleotidyltransferase and Phosphotransferase with Identical Modification Sites and Distinct Temporal Order

Antimicrob Agents Chemother. 2018 Jun 26;62(7):e00193-18. doi: 10.1128/AAC.00193-18. Print 2018 Jul.

Abstract

Muraymycins are antibacterial natural products from Streptomyces spp. that inhibit translocase I (MraY), which is involved in cell wall biosynthesis. Structurally, muraymycins consist of a 5'-C-glycyluridine (GlyU) appended to a 5″-amino-5″-deoxyribose (ADR), forming a disaccharide core that is found in several peptidyl nucleoside inhibitors of MraY. For muraymycins, the GlyU-ADR disaccharide is further modified with an aminopropyl-linked peptide to generate the simplest structures, annotated as the muraymycin D series. Two enzymes encoded in the muraymycin biosynthetic gene cluster, Mur29 and Mur28, were functionally assigned in vitro as a Mg·ATP-dependent nucleotidyltransferase and a Mg·ATP-dependent phosphotransferase, respectively, both modifying the 3″-OH of the disaccharide. Biochemical characterization revealed that both enzymes can utilize several nucleotide donors as cosubstrates and the acceptor substrate muraymycin also behaves as an inhibitor. Single-substrate kinetic analyses revealed that Mur28 preferentially phosphorylates a synthetic GlyU-ADR disaccharide, a hypothetical biosynthetic precursor of muraymycins, while Mur29 preferentially adenylates the D series of muraymycins. The adenylated or phosphorylated products have significantly reduced (170-fold and 51-fold, respectively) MraY inhibitory activities and reduced antibacterial activities, compared with the respective unmodified muraymycins. The results are consistent with Mur29-catalyzed adenylation and Mur28-catalyzed phosphorylation serving as complementary self-resistance mechanisms, with a distinct temporal order during muraymycin biosynthesis.

Keywords: MraY inhibitor; antibiotic; biosynthesis; nucleoside; resistance; translocase I.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / biosynthesis
  • Bacterial Proteins / antagonists & inhibitors*
  • Nucleosides / biosynthesis*
  • Nucleosides / chemistry*
  • Nucleotides / biosynthesis
  • Nucleotidyltransferases / chemistry*
  • Nucleotidyltransferases / genetics
  • Peptides / chemistry*
  • Phosphorylation
  • Phosphotransferases / chemistry*
  • Phosphotransferases / genetics
  • Streptomyces / metabolism*
  • Transferases (Other Substituted Phosphate Groups)
  • Transferases / antagonists & inhibitors*

Substances

  • Anti-Bacterial Agents
  • Bacterial Proteins
  • Nucleosides
  • Nucleotides
  • Peptides
  • muraymycin D1
  • Transferases
  • Phosphotransferases
  • Nucleotidyltransferases
  • Transferases (Other Substituted Phosphate Groups)
  • mraY protein, Bacteria