Arginine methylation is required for canonical Wnt signaling and endolysosomal trafficking

Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):E5317-E5325. doi: 10.1073/pnas.1804091115. Epub 2018 May 17.

Abstract

Arginine methylation has emerged as a widespread and reversible protein modification with the potential to regulate a multitude of cellular processes, but its function is poorly understood. Endolysosomes play an important role in Wnt signaling, in which glycogen synthase kinase 3 (GSK3) becomes sequestered inside multivesicular bodies (MVBs) by the process known as microautophagy, causing the stabilization of many proteins. Up to 20% of cellular proteins contain three or more consecutive putative GSK3 sites, and of these 33% also contain methylarginine (meArg) modifications. Intriguingly, a cytoskeletal protein was previously known to have meArg modifications that enhanced subsequent phosphorylations by GSK3. Here, we report the unexpected finding that protein arginine methyltransferase 1 (PRMT1) is required for canonical Wnt signaling. Treatment of cultured cells for 5-30 min with Wnt3a induced a large increase in total endocytic vesicles which were also positive for asymmetric dimethylarginine modifications. Protease protection studies, both biochemical and in situ in cultured cells, showed that many meArg-modified cytosolic proteins became rapidly translocated into MVBs together with GSK3 and Lys48-polyubiquitinated proteins by ESCRT-driven microautophagy. In the case of the transcription factor Smad4, we showed that a unique arginine methylation site was required for GSK3 phosphorylation and Wnt regulation. The enzyme PRMT1 was found to be essential for Wnt-stimulated arginine methylation, GSK3 sequestration, and canonical Wnt signaling. The results reveal a cell biological role for PRMT1 arginine methylation at the crossroads of growth factor signaling, protein phosphorylation, membrane trafficking, cytosolic proteolysis, and Wnt-regulated microautophagy.

Keywords: endocytosis; lysosomes; methyl Arginine; microautophagy; multivesicular bodies.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arginine / metabolism*
  • Cell Line
  • Endocytosis / physiology
  • Endosomes / metabolism
  • Glycogen Synthase Kinase 3 / metabolism
  • Humans
  • Intercellular Signaling Peptides and Proteins / metabolism
  • Lysosomes / metabolism
  • Methylation
  • Multivesicular Bodies / metabolism
  • Phosphorylation
  • Protein Processing, Post-Translational
  • Protein Transport
  • Protein-Arginine N-Methyltransferases / metabolism*
  • Protein-Arginine N-Methyltransferases / physiology
  • Repressor Proteins / metabolism*
  • Repressor Proteins / physiology
  • Smad4 Protein
  • Ubiquitination
  • Wnt Proteins / metabolism
  • Wnt Signaling Pathway / physiology*

Substances

  • Intercellular Signaling Peptides and Proteins
  • Repressor Proteins
  • SMAD4 protein, human
  • Smad4 Protein
  • Wnt Proteins
  • Arginine
  • PRMT1 protein, human
  • Protein-Arginine N-Methyltransferases
  • Glycogen Synthase Kinase 3