Fictibacillus iocasae sp. nov., isolated from the deep-sea sediment in Pacmanus, Manus Basin

Arch Microbiol. 2018 Sep;200(7):1123-1128. doi: 10.1007/s00203-018-1527-x. Epub 2018 May 25.

Abstract

A novel bacterium, designed strain S38T, was isolated from the deep-sea sediment of Pacmanus hydrothermal field in Manus Basin. The isolate was gram-positive, aerobic, motile, and was defined by endospore-forming rods. Strain S38T grew at 16-38 °C, pH 6-8, and in the presence of 0-7% (w/v) NaCl. Based on 16S rRNA gene sequence, S38T was grouped into the genus Fictibacillus and was most closely related to Fictibacillus phosphorivorans CCM 8426T (97.8%), Fictibacillus nanhaiensis DSM 23009T (97.8%), Fictibacillus halophilus DSM 100124T (97.7%), and Fictibacillus barbaricus DSM 14730T (97.5%). The diagnostic diamino acid of the cell wall was meso-diaminopimelic acid. The major fatty acids were iso-C15:0 and anteiso-C15:0. MK-7 was the predominant respiratory quinone and diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine were the major polar lipids. The genomic DNA G + C content was 46.8 mol%. Phylogenetic analysis, DNA-DNA relatedness, and phenotypic characteristics supported that strain S38T represents a novel species within the genus Fictibacillus, for which the name Fictibacillus iocasae sp. nov. was proposed. The type strain is S38T (= KCTC 33865T = DSM 104298T = CGMCC 1.16031T).

Keywords: Chemotaxonomic characterization; Fictibacillus iocasae; Hydrothermal sediment; Type strain.

MeSH terms

  • Bacillaceae / classification
  • Bacillaceae / genetics
  • Bacillaceae / isolation & purification*
  • Bacillaceae / metabolism
  • Base Composition
  • Cell Wall / metabolism
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Fatty Acids / metabolism
  • Geologic Sediments / microbiology*
  • Nucleic Acid Hybridization
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sodium Chloride / metabolism
  • Spores, Bacterial / classification
  • Spores, Bacterial / genetics
  • Spores, Bacterial / metabolism

Substances

  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Sodium Chloride