Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: The role of the last glaciation

PLoS One. 2018 Jun 6;13(6):e0197611. doi: 10.1371/journal.pone.0197611. eCollection 2018.

Abstract

One of the most relevant characteristics of the extant Southern Ocean fauna is its resiliency to survive glacial processes of the Quaternary. These climatic events produced catastrophic habitat reductions and forced some marine benthic species to move, adapt or go extinct. The marine benthic species inhabiting the Antarctic upper continental shelf faced the Quaternary glaciations with different strategies that drastically modified population sizes and thus affected the amount and distribution of intraspecific genetic variation. Here we present new genetic information for the most conspicuous regular sea urchin of the Antarctic continental shelf, Sterechinus neumayeri. We studied the patterns of genetic diversity and structure in this broadcast-spawner across three Antarctic regions: Antarctic Peninsula, the Weddell Sea and Adélie Land in East Antarctica. Genetic analyses based on mitochondrial and nuclear markers suggested that S. neumayeri is a single genetic unit around the Antarctic continent. The species is characterized by low levels of genetic diversity and exhibits a typical star-like haplotype genealogy that supports the hypothesis of a single in situ refugium. Based on two mutation rates standardized for this genus, the Bayesian Skyline plot analyses detected a rapid demographic expansion after the Last Glacial Maximum. We propose a scenario of rapid postglacial expansion and recolonization of Antarctic shallow areas from a less ice-impacted refugium where the species survived the LGM. Considering the patterns of genetic diversity and structure recorded in the species, this refugium was probably located in East Antarctica.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bayes Theorem
  • DNA, Mitochondrial / genetics*
  • Ecosystem
  • Gene Flow
  • Genetics, Population*
  • Haplotypes / genetics
  • Oceans and Seas
  • Phylogeography*
  • Population Density
  • Sea Urchins / genetics*
  • Sea Urchins / physiology

Substances

  • DNA, Mitochondrial

Grants and funding

This study was funded by the Instituto Antártico Chileno (INACH) grant D05-09 and the Comision Nacional de Investigación Científica y Tecnológica (Conicyt) Ph.D. Grant D-21080136 to AD. We also are grateful to the following projects: Fondo Nacional de Desarrollo Científico y Tecnológico (Fondecyt) Post Ph.D. project 3130677 and Universidad de Concepción Internal project 217.113.093-1 to AD, regular Fondecyt project 1161358 to KG, regular Fondecyt project 1151336 to KG, Initiation Fondecyt Project 11140087 and INACH RG_18-17 to CAG-W, and Conicyt Ph.D. Grant 2115017 and INACH project DT_04-16 to CM. Finally, we mostly appreciate the support of the Iniciativa Científica Milenio (ICM) projects P05-002 and the Programa de Financiamiento Basal PFB 023 (Instituto de Ecología y Biodiversidad - IEB) to EP and CAG-W, the Programa de Investigación Asociativa PIA-CONICYT ACT172065 to EP, AD, KG and CAG-W, and the Fondo de Financiamiento de Centros de Investigación en Áreas Prioritarias (FONDAP) project Nº15150003, Centro de Investigación Dinámica de Ecosistemas Marinos (IDEAL). There was no additional external funding received for this study. All the specimens were collected under the regulation of the Chilean Antarctic Institute (INACH). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.