Characterization and comparative expression analysis of CUL1 genes in rice

Genes Genomics. 2018 Mar;40(3):233-241. doi: 10.1007/s13258-017-0622-8. Epub 2017 Oct 19.

Abstract

Cullin-RING E3 ubiquitin ligase (CRL) complex is known as the largest family of E3 ligases. The most widely characterized CRL, SCF complex (CRL1), utilizes CUL1 as a scaffold protein to assemble the complex components. To better understand CRL1-mediated cellular processes in rice, three CUL1 genes (OsCUL1s) were isolated in Oryza sativa. Although all OsCUL1 proteins exhibited high levels of amino acid similarities with each other, OsCUL1-3 had a somewhat distinct structure from OsCUL1-1 and OsCUL1-2. Basal expression levels of OsCUL1-3 were much lower than those of OsCUL1-1 and OsCUL1-2 in all selected samples, showing that OsCUL1-1 and OsCUL1-2 play predominant roles relative to OsCUL1-3 in rice. OsCUL1-1 and OsCUL1-2 genes were commonly upregulated in dry seeds and by ABA and salt/drought stresses, implying their involvement in ABA-mediated processes. These genes also showed similar expression patterns in response to various hormones and abiotic stresses, alluding to their functional redundancy. Expression of the OsCUL1-3 gene was also induced in dry seeds and by ABA-related salt and drought stresses, implying their participation in ABA responses. However, its expression pattern in response to hormones and abiotic stresses was somehow different from those of the OsCUL1-1 and OsCUL1-2 genes. Taken together, these findings suggest that the biological role and function of OsCUL1-3 may be distinct from those of OsCUL1-1 and OsCUL1-2. The results of expression analysis of OsCUL1 genes in this study will serve as a useful platform to better understand overlapping and distinct roles of OsCUL1 proteins and CRL1-mediated cellular processes in rice plants.

Keywords: Abiotic stresses; CRL; Hormones; OsCUL1; Ubiquitination.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Cullin Proteins / biosynthesis
  • Cullin Proteins / genetics*
  • Cullin Proteins / metabolism
  • Droughts
  • Gene Expression Regulation, Plant
  • Genes, Regulator
  • Germination
  • Hormones / pharmacology
  • Oryza / cytology
  • Oryza / genetics*
  • Oryza / metabolism
  • Plant Growth Regulators / metabolism
  • Plant Proteins / biosynthesis
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Seeds / genetics
  • Sequence Homology, Amino Acid
  • Sodium Chloride / metabolism
  • Stress, Physiological / genetics
  • Ubiquitin-Protein Ligases / chemistry
  • Ubiquitination

Substances

  • Cullin 1
  • Cullin Proteins
  • Hormones
  • Plant Growth Regulators
  • Plant Proteins
  • Sodium Chloride
  • Ubiquitin-Protein Ligases