iS-CellR: a user-friendly tool for analyzing and visualizing single-cell RNA sequencing data

Bioinformatics. 2018 Dec 15;34(24):4305-4306. doi: 10.1093/bioinformatics/bty517.


Summary: Interactive platform for single-cell RNA-sequencing (iS-CellR) is a web-based Shiny application that is designed to provide user-friendly, comprehensive analysis of single-cell RNA sequencing data. iS-CellR has the capability to run on any modern web browser and provides an accessible graphical user interface that enables the user to perform complex single-cell RNA-sequencing analysis without requiring programming skills.

Availability and implementation: iS-CellR is open source and available through GitHub at iS-CellR is implemented in Docker and can be launched on any operating system with Docker installed.

Supplementary information: Supplementary data are available at Bioinformatics online.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computational Biology
  • Internet
  • Sequence Analysis, RNA*
  • Single-Cell Analysis*
  • Software*