Histone Citrullination Represses MicroRNA Expression, Resulting in Increased Oncogene mRNAs in Somatolactotrope Cells

Mol Cell Biol. 2018 Sep 14;38(19):e00084-18. doi: 10.1128/MCB.00084-18. Print 2018 Oct 1.

Abstract

Peptidylarginine deiminase (PAD) enzymes convert histone arginine residues into citrulline to modulate chromatin organization and gene expression. Although PADs are expressed in anterior pituitary gland cells, their functional role and expression in pituitary adenomas are unknown. To begin to address these issues, we first examined normal human pituitaries and pituitary adenomas and found that PAD2, PAD4, and citrullinated histones are highest in prolactinomas and somatoprolactinomas. In the somatoprolactinoma-derived GH3 cell line, PADs citrullinate histone H3, which is attenuated by a pan-PAD inhibitor. RNA sequencing and chromatin immunoprecipitation (ChIP) studies show that the expression of microRNAs (miRNAs) let-7c-2, 23b, and 29c is suppressed by histone citrullination. Our studies demonstrate that these miRNAs directly target the mRNA of the oncogenes encoding HMGA, insulin-like growth factor 1 (IGF-1), and N-MYC, which are highly implicated in human prolactinoma/somatoprolactinoma pathogenesis. Our results are the first to define a direct role for PAD-catalyzed histone citrullination in miRNA expression, which may underlie the etiology of prolactinoma and somatoprolactinoma tumors through regulation of oncogene expression.

Keywords: citrullination; epigenetics; miRNA; oncogenes; prolactinoma.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Cells, Cultured
  • Citrullination / genetics
  • Epigenesis, Genetic
  • Gene Expression
  • Gene Knockdown Techniques
  • HMGA Proteins / genetics
  • HMGA Proteins / metabolism
  • Histone Code / genetics
  • Histones / chemistry
  • Histones / metabolism*
  • Humans
  • Insulin-Like Growth Factor I / genetics
  • Insulin-Like Growth Factor I / metabolism
  • Lactotrophs / cytology
  • Lactotrophs / metabolism*
  • MicroRNAs / genetics*
  • MicroRNAs / metabolism*
  • Models, Biological
  • N-Myc Proto-Oncogene Protein / genetics
  • N-Myc Proto-Oncogene Protein / metabolism
  • Oncogenes*
  • Pituitary Neoplasms / genetics
  • Pituitary Neoplasms / metabolism
  • Prolactinoma / genetics
  • Prolactinoma / metabolism
  • Protein-Arginine Deiminase Type 2
  • Protein-Arginine Deiminase Type 4
  • Protein-Arginine Deiminases / antagonists & inhibitors
  • Protein-Arginine Deiminases / genetics
  • Protein-Arginine Deiminases / metabolism
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism*
  • Somatotrophs / cytology
  • Somatotrophs / metabolism*

Substances

  • HMGA Proteins
  • Histones
  • IGF1 protein, human
  • MIRN23a microRNA, human
  • MIRN29a microRNA, human
  • MYCN protein, human
  • MicroRNAs
  • N-Myc Proto-Oncogene Protein
  • RNA, Messenger
  • mirnlet7 microRNA, human
  • Insulin-Like Growth Factor I
  • PADI2 protein, human
  • PADI4 protein, human
  • Protein-Arginine Deiminase Type 2
  • Protein-Arginine Deiminase Type 4
  • Protein-Arginine Deiminases