Joint Segment-Level and Pixel-Wise Losses for Deep Learning Based Retinal Vessel Segmentation

IEEE Trans Biomed Eng. 2018 Sep;65(9):1912-1923. doi: 10.1109/TBME.2018.2828137. Epub 2018 Apr 19.

Abstract

Objective: Deep learning based methods for retinal vessel segmentation are usually trained based on pixel-wise losses, which treat all vessel pixels with equal importance in pixel-to-pixel matching between a predicted probability map and the corresponding manually annotated segmentation. However, due to the highly imbalanced pixel ratio between thick and thin vessels in fundus images, a pixel-wise loss would limit deep learning models to learn features for accurate segmentation of thin vessels, which is an important task for clinical diagnosis of eye-related diseases.

Methods: In this paper, we propose a new segment-level loss which emphasizes more on the thickness consistency of thin vessels in the training process. By jointly adopting both the segment-level and the pixel-wise losses, the importance between thick and thin vessels in the loss calculation would be more balanced. As a result, more effective features can be learned for vessel segmentation without increasing the overall model complexity.

Results: Experimental results on public data sets demonstrate that the model trained by the joint losses outperforms the current state-of-the-art methods in both separate-training and cross-training evaluations.

Conclusion: Compared to the pixel-wise loss, utilizing the proposed joint-loss framework is able to learn more distinguishable features for vessel segmentation. In addition, the segment-level loss can bring consistent performance improvement for both deep and shallow network architectures.

Significance: The findings from this study of using joint losses can be applied to other deep learning models for performance improvement without significantly changing the network architectures.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Databases, Factual
  • Deep Learning*
  • Diagnostic Techniques, Ophthalmological
  • Humans
  • Image Interpretation, Computer-Assisted / methods*
  • Retinal Vessels / diagnostic imaging*