Barley heads east: Genetic analyses reveal routes of spread through diverse Eurasian landscapes

PLoS One. 2018 Jul 18;13(7):e0196652. doi: 10.1371/journal.pone.0196652. eCollection 2018.

Abstract

One of the world's most important crops, barley, was domesticated in the Near East around 11,000 years ago. Barley is a highly resilient crop, able to grown in varied and marginal environments, such as in regions of high altitude and latitude. Archaeobotanical evidence shows that barley had spread throughout Eurasia by 2,000 BC. To further elucidate the routes by which barley cultivation was spread through Eurasia, simple sequence repeat (SSR) analysis was used to determine genetic diversity and population structure in three extant barley taxa: domesticated barley (Hordeum vulgare L. subsp. vulgare), wild barley (H. vulgare subsp. spontaneum) and a six-rowed brittle rachis form (H. vulgare subsp. vulgare f. agriocrithon (Åberg) Bowd.). Analysis of data using the Bayesian clustering algorithm InStruct suggests a model with three ancestral genepools, which captures a major split in the data, with substantial additional resolution provided under a model with eight genepools. Our results indicate that H. vulgare subsp. vulgare f. agriocrithon accessions and Tibetan Plateau H. vulgare subsp. spontaneum are closely related to the H. vulgare subsp. vulgare in their vicinity, and are therefore likely to be feral derivatives of H. vulgare subsp. vulgare. Under the eight genepool model, cultivated barley is split into six ancestral genepools, each of which has a distinct distribution through Eurasia, along with distinct morphological features and flowering time phenotypes. The distribution of these genepools and their phenotypic characteristics is discussed together with archaeological evidence for the spread of barley eastwards across Eurasia.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Archaeology
  • Asia
  • Bayes Theorem
  • Crops, Agricultural / genetics*
  • Domestication
  • Europe
  • Genetic Variation*
  • Hordeum / genetics*
  • Humans
  • Microsatellite Repeats / genetics*
  • Middle East
  • Phylogeny

Grants and funding

Funding source 1. "Food Globalization in Prehistory" project (FOGLIP), grant number 249642, awarded to Martin Kenneth Jones; funded by the European Research Council - FP7-IDEAS-ERC - Specific programme: "Ideas" implementing the Seventh Framework Programme of the European Community for research, technological development and demonstration activities (2007 to 2013), url: http://cordis.europa.eu/programme/rcn/845_en.html. Funding source 2: “The Vavilov Institute and Cambridge: insights from historic crop resources”, grant number JP101321, awarded to Martin Kenneth Jones; funded by the Royal Society of London, International Joint Project 2010/R3 (Russia costshare), url: https://royalsociety.org/grants-schemes-awards/grants/international-exchanges/. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.